KEGG   Pseudomonas fluorescens UK4: HZ99_08385
Entry
HZ99_08385        CDS       T03319                                 
Name
(GenBank) DNA polymerase III subunit gamma/tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
pfn  Pseudomonas fluorescens UK4
Pathway
pfn03030  DNA replication
pfn03430  Mismatch repair
pfn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pfn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HZ99_08385
   03430 Mismatch repair
    HZ99_08385
   03440 Homologous recombination
    HZ99_08385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfn03032]
    HZ99_08385
   03400 DNA repair and recombination proteins [BR:pfn03400]
    HZ99_08385
Enzymes [BR:pfn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HZ99_08385
DNA replication proteins [BR:pfn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HZ99_08385
DNA repair and recombination proteins [BR:pfn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HZ99_08385
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_gamma3 DNA_pol3_tau_5 AAA RuvB_N AAA_5 AAA_22 ResIII AAA_16 AAA_14 TIP49 AAA_30 AAA_19 AAA_18 PIF1 AAA_2 TsaE nSTAND3 DUF3646 AAA_7 HasA SKI Rad17 Mg_chelatase AAA_24 RsgA_GTPase zf-CXXC Herpes_Helicase
Other DBs
NCBI-ProteinID: AIG02169
UniProt: A0A379IGV3
Position
complement(1890562..1892613)
AA seq 683 aa
MSYQVLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK
CLNCETGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF
KVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTP
ERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVMATDVRAM
LGTLDHGQVFDVLHALIEGDAKALLEAVRHLSEQGPDWNGVLSEILNVLHRVAIAQALPE
GVDNGHGDRDRVLALARALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVMLRMLAFRP
ADTADAPRQPLKPVGISQATVDSAKPVAGAAVVAPVIAPEPVTATPAPVADEPVAPVAAP
EPVAEPEPAPVVDLPWNDPAEAAAELAPAVEPVLETTGEQPELTPMPTPTPDSVVPDAPE
WVSAPVPEPTMAEVDAATPGIDLDDEPPLDEDYIEPDMDSAYSYLDDLASEHTAEPAPEP
EAEPAAMPATGLALQWLELFPKLSISGMTGSIAANCTLIAVEGDHWLLHLDPAHSALFNA
TQQRRLNDALNQFHERTLTVTIELIKPEQETPAQAATRRRLNRQREAEESIHADPLIQQM
MEQFGAVVRHDTIEPVEAQAAAG
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgagttatcaggttcttgcacgtaaatggcgcccgcgctcgttccgcgaaatggtcggc
cagacccatgtgctcaaggctctgatcaatgccttggacagccagcggttgcaccacgcc
tacctgttcaccggcacgcgcggggtgggcaaaaccaccattgcacggatcattgccaag
tgtctgaactgtgagacgggtatcacttcgaccccctgtggtacctgctcggtatgccgg
gagatcgacgaagggcgttttgtcgacctgatcgagatcgacgccgcgagccgtaccaag
gtcgaggacacccgcgaactgctcgacaacgtgcagtatgcccctagccgtgggcgcttc
aaggtctacctgatcgacgaagtgcacatgctctccagccattccttcaacgccctgttg
aaaaccctggaggagccgccgccctacgttaaattcatcctggccaccaccgatcctcag
aaacttcctgcaacgattttgtcgcgctgcctgcagttctccctgaagaacatgaccccc
gagcgggtggtcgagcatttgacacacgtgctgggtgtggagaacgtgccgttcgaagac
gacgcgctgtggctgctgggccgtgccgccgatggttcgatgcgtgatgccatgagcctg
accgaccaggcgattgccttcggcgaaggcaaggtcatggccaccgatgtgcgtgccatg
cttggcaccctcgatcacggccaggtctttgacgtgttgcatgcgctgatcgaaggcgat
gccaaggccttgctggaagctgtccgccatttgtcggaacagggcccggactggaatggc
gtgctctcggaaattctcaatgtgctgcaccgtgtcgctatcgcccaggcgctgcctgaa
ggcgtcgataacggccatggcgaccgcgatcgtgtgttggccctggcccgggcattgccg
gccgaagatgtgcagttttactaccagatgggccttatcggccgtcgcgacctgccgttg
gcacccgacccgcgcggcgggtttgaaatggtcatgctgcgcatgctggcgttccgcccg
gcagacaccgccgacgcgccgagacagccgctaaagccagtgggaatcagccaggccaca
gttgattccgccaaaccagtggctggcgcggcggtcgtcgcgccagtgattgcgccggaa
cctgtgacagccacgcccgctccagtcgccgatgagcctgtggcacctgtggcagcgccg
gagccggttgccgagcctgagcccgcgcctgtggtcgatctgccgtggaacgacccggca
gaggccgcggccgagctggcacctgcggtcgaaccggtgctggaaaccaccggcgagcag
cctgagttgacgccgatgccgacgccgacccccgacagcgtggtgccggacgcgccggaa
tgggtctcggcccccgtgcccgagccgaccatggctgaagtggatgcggccacccccggc
atcgacctggatgacgagccgccgctggacgaagattacatcgagccggacatggattcg
gcctatagctacctggacgatctcgccagcgagcacaccgccgagcctgcgcccgagccc
gaggcggaaccggccgcgatgccggccaccggcctggccctgcaatggctggagctgttc
ccgaaattgtcgatctccggcatgaccgggagcatcgcagccaactgcacgctgatcgca
gtcgagggtgatcactggctgttgcacctggacccggcccacagtgccctgttcaatgcg
actcagcagcgccggctcaacgatgccctgaaccagttccacgaacgcaccctgacggtg
accatcgagctgatcaagcccgagcaggaaaccccggcccaggccgcgacccgtcgccgt
ctcaaccgccagcgtgaggccgaggagtcgatccacgccgatccactcatccagcagatg
atggagcagtttggcgcggtggtgcgccacgatactattgagcccgtcgaagcccaggct
gcagcgggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (41)   

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