KEGG   Pseudomonas fluorescens Pf0-1: Pfl01_3217
Entry
Pfl01_3217        CDS       T00283                                 
Symbol
sbcC
Name
(GenBank) exonuclease
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
pfo  Pseudomonas fluorescens Pf0-1
Brite
KEGG Orthology (KO) [BR:pfo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfo03400]
    Pfl01_3217 (sbcC)
DNA repair and recombination proteins [BR:pfo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Pfl01_3217 (sbcC)
    Archaeal homologous recombinant proteins
     Pfl01_3217 (sbcC)
SSDB
Motif
Pfam: AAA_23 SbcC_Walker_B SMC_N AAA_29 AAA_21 ABC_tran MMR_HSR1 AAA_15 RsgA_GTPase nSTAND3 AAA_22 AAA_25
Other DBs
NCBI-ProteinID: ABA74955
UniProt: Q3KB99
Position
3696858..3700499
AA seq 1213 aa
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LNNTGRDAKVPDADGEIATGDPRTLLRRGTGEGFAEVDFVGVDGRRYRARWEANRAREKA
GGKLQASRQSLRDIDQDQLLASQKGEYKTQLEAALGLNFEQFTRAVLLAQSEFSAFLKAD
DNDRSELLEKLTDTALYTRLGRRAFDKTKEAREAHKQLQDQATGVTPLAPEARAELDERF
NVAQQQLKLQQAQLKQIEQQHDWLKELLRLQDSQQAAAEQLRSAEHERESLAGERLKLTR
LEQLAPQRHQFARKTELDTQLTPLAEQISAHTRQQSELAERQTRLEQDLAAAQIALTQAQ
TQLSESAPLLRQAFEEQSTLARLAKDVASGAEAKHAAEQACTQGQSTIQSLLDQQKQVAE
RLQRIAADLEQSAHLAPLSEAWNAYRDRLQQLMLIGNRLNKGQGELASLEENAARASEAL
ATQKQQLEVLFKEAGAEPDAVAEQIGILGTLLQDNRKQLRAIEDLTRLWASQQDLDKRSA
ELQQRQLDAQQERERLTQDGVKTKSELTVAEQTLNVTRELLERQRLARSASVEELRAQLQ
DDQPCPVCGSNEHPYHQPEALLQSLGRHDESEQASAQQAVDQLKEKLTELRASVGGVIAQ
QKELLQQQEQLAAQQQSLTPSIEAHPLAASLLDQDSDKRAAWLTRQNEQLNQSITQDEQR
QTALLTLQQDAARLTQQLRQAETAHQQASQHLSNQQRELSADRQRLDEELAAFATLLPSD
TLEALRAEPASTFMQLDRQIAERLAQVDQQKEELAEQQQRQQTLEKEQDRQQGRVQQLQN
AEQQLNALTGQQQASQEKLAHLLGDHSCAEHWQQQLEQAVEQARNAESTTTQALQDARTQ
RVQIAAELKAQQERLQALETEDRDLAGKIADWRARHPELDDGGLEDLLRIDDAQVDELRQ
RLQHNEKAVEQAKVLLQERDQRLRDHQAQHNGNLDAEQLASALADLQNQCTASEQQCAEL
RAEQAEDQRRQNANQALAQQIADAYAEYQRWARLNALIGSATGDTFRKIAQAYNLDLLVH
HANVQLRQLVKRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
QRQGNGLSTLEVK
NT seq 3642 nt   +upstreamnt  +downstreamnt
atgaagattctcgccattcggttgaagaacctcgcctcgctggccggcccgttcgagatc
gactttaccgccgaaccgctggccagcgccggcctgttcgcgatcaccggcccgaccggc
gccggcaaaagtactttgctcgatgcgctgtgcctggcgctgttcggcgccgtgccgcgc
ctgaacaacaccgggcgtgacgccaaggtgccggacgccgacggcgaaatcgccaccggc
gacccgcgcaccttgctgcgtcgcggcaccggtgaaggttttgccgaagtggattttgtc
ggcgtcgatggccgccgctatcgtgcgcgctgggaagccaatcgcgcccgtgaaaaggcc
ggcggcaagttgcaggccagccgtcagagcctgcgcgacatcgatcaggatcaactgctc
gccagtcagaaaggcgagtacaagactcagctcgaagctgcgctgggcctgaacttcgaa
cagttcacccgcgccgtgctgctggcccagagcgagttcagtgccttcctcaaggccgac
gacaacgaccgcagcgaactgctggaaaagctcaccgacaccgcgctctacacccgcctc
ggccgccgcgcgttcgacaagaccaaagaggcccgcgaagcccacaagcagttgcaggat
caggccaccggcgtgaccccgctggcccctgaagcccgcgccgaactcgacgaacgcttc
aatgtcgcccagcagcaactgaagttgcagcaagcgcaactcaagcagatcgagcaacag
cacgactggctcaaggaactgctgcggctgcaagactcgcaacaagccgccgccgagcaa
ctgcgcagcgccgagcatgagcgagagtcgctggccggtgagcgtttgaagctcacccgc
ctggaacaactcgcgccgcaacggcaccagttcgcccgcaaaaccgaactggatacacag
ctgacgccactggcggaacagatcagcgcgcacacccggcaacaaagcgaactggctgag
cgccagacgcgactggaacaggatctcgccgccgcgcagatcgccctgacccaggcgcaa
acgcagttgagcgaaagcgcgccactattgcgccaggctttcgaggagcaaagcaccctc
gcccgcctcgccaaggacgttgcgtccggcgccgaagcgaagcacgccgcagagcaggcc
tgcacccagggccaaagcacgatccagtccctgctcgatcagcaaaaacaggtcgccgaa
cgcttgcagcgcatcgccgccgatcttgagcaaagcgctcacttggcaccgttgagcgaa
gcgtggaatgcctaccgcgaccgcttgcagcaactgatgctgatcggcaatcggttgaac
aagggccaaggtgaactggcctctctcgaagaaaacgccgctcgcgccagcgaagcgctc
gccacgcagaagcaacagctggaagtgctgttcaaggaggccggcgccgagcctgatgcg
gtcgccgagcagatcggcatcctcggcactctgttgcaggacaaccgcaaacaactgcgc
gccatcgaagacttgacgcgcctgtgggccagtcagcaggacctggacaagcgcagtgcc
gaactgcaacagcgtcagctcgatgcgcaacaggagcgcgagcgcctgactcaggacgga
gtaaaaaccaagtccgagctgaccgtcgccgaacagaccctcaacgtcacccgtgaactg
cttgagcgtcagcgtctggcgcgcagtgccagtgttgaagagttgcgcgcgcagttgcag
gacgaccagccgtgcccggtgtgtggcagcaacgagcatccgtatcaccagccggaagcc
ctgctgcaaagcctcggccgtcacgatgaaagcgagcaggccagcgcgcagcaagccgtc
gatcaactgaaggaaaaactcaccgagctgcgcgccagcgtcggtggcgtgattgcccaa
cagaaagagttgctgcaacagcaggaacaactggctgctcagcaacaatcgctgacgccg
agtatcgaggcgcatccgctggcggcatcgttgctggatcaggacagtgacaagcgcgct
gcgtggctgacccgccagaatgaacaactgaaccagagcatcacccaggacgaacagcgc
cagaccgccctgctcaccctgcaacaggatgcggcgcgcctgactcagcagttgcgtcag
gccgaaacggcgcaccagcaagcgtcgcagcacctgagcaatcaacagcgcgaactgagc
gctgaccgccaacgcctggacgaagaactggcggccttcgccacactgctgccgagcgac
acgctcgaagccctgcgcgctgaaccagcctcaacattcatgcagctcgaccggcagatt
gccgagcgtctggcgcaagtcgatcagcagaaggaagagctggccgaacagcaacaacgc
cagcagacgctcgagaaagaacaggaccgccaacagggccgtgtgcagcagctgcaaaac
gctgagcagcagctcaacgcgctgaccgggcaacaacaggccagccaggaaaaactggcg
cacttgttgggcgatcacagctgcgccgagcattggcagcagcaactggaacaggccgtg
gagcaggcgcgcaacgccgaatccacgacgactcaggcgttgcaggacgcacgtacgcag
cgggtgcaaatcgccgccgaactgaaagcgcagcaagagcgtctgcaagcgctggaaacc
gaagatcgtgatctggccggcaagattgccgactggcgtgcgcgccatccggaactggat
gacggtggcctcgaagacctgctgcggatcgatgacgcgcaggtcgacgaactgcgccag
cgcttgcagcacaacgaaaaagccgttgaacaggccaaggtgttgttgcaggaacgcgat
cagcgcctgcgcgatcatcaggcccaacacaacggcaatctggatgccgaacaactcgcc
agcgccctcgccgacctgcaaaaccagtgcacggccagcgaacagcaatgtgccgaactg
cgcgccgagcaggccgaagaccagcggcgccagaacgccaatcaggcgctggcgcagcag
atcgccgatgcctatgccgagtatcagcgctgggcgcggctcaatgcgctgatcggctcg
gccaccggcgataccttccgcaagatcgcccaggcctacaacctcgacctgctggtgcat
cacgccaacgtgcagctgcggcaactggtcaagcgctatcgcctcaaacgcggcggcagc
atgctcggcctgttggtcatggacaccgaaatgggcgacgaactgcgctcggtgcattcg
ctgtccggcggcgaaaccttcctcgtgtcgctggccctcgcactgggcctggcctcgatg
gcatcgagcacgctgaagatcgaatcgctgttcatcgacgaaggcttcggcagtctcgat
ccggaatccctgcaactggccatggacgccctcgacggcttgcaggcacaggggcgcaag
gttgcggtgatttcgcacgtgcaggaaatgcacgagcggattccggtgcagattcaggta
cagcgccagggcaacggtctgagcacactggaggtgaaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (19)   

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