KEGG   Pseudomonas fluorescens Pf0-1: Pfl01_5086
Entry
Pfl01_5086        CDS       T00283                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pfo  Pseudomonas fluorescens Pf0-1
Pathway
pfo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pfo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Pfl01_5086 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfo03021]
    Pfl01_5086 (rpoB)
   03400 DNA repair and recombination proteins [BR:pfo03400]
    Pfl01_5086 (rpoB)
Enzymes [BR:pfo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Pfl01_5086 (rpoB)
Transcription machinery [BR:pfo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Pfl01_5086 (rpoB)
DNA repair and recombination proteins [BR:pfo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Pfl01_5086 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED
Other DBs
NCBI-ProteinID: ABA76823
UniProt: Q3K5Y1
Position
complement(5714594..5718667)
AA seq 1357 aa
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVKGEG
LSLELVPQRLRGEVAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELDVPLDYVLGR
TTAKAIVHPATGEILAECNTELSTEILAKIAKAGVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDDIVFLSAIEEADHVIAQASATMNEQKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaactttcgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatcccattgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgttatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgtggcaagacgcacagctccggcaagctgctgtactccgcgcgcatc
attccttaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgcgcgctcggttatacc
accgaggaagtgctggacgcgttctacactaccaacgtattccacgtgaaaggcgaaggc
ctgagcctggagctggtacctcagcgtctgcgtggtgaagttgcggttctcgatatccag
gacgacaaaggcaaggtgatcgttgagcagggccgtcgtattactgcccgccacatcaac
cagctggaaaaagccgggatcaaagagctggacgtgcctctggactacgttctgggtcgt
accaccgccaaggccatcgtgcacccggctaccggtgagatcctggcagagtgcaacacc
gagctttcgaccgagatcctggcgaaaatcgccaaggccggcgtcgtacgcatcgaaact
ctgtacaccaacgacatcgactgcggtccgttcgtctccgacacgctgaagatcgactcc
accagtaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccgggtgaaccg
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagtcctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagatctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtctctgcactcggccct
ggcggtctgactcgtgagcgcgcgggcttcgaagtccgtgacgtacacccgactcactat
ggtcgtgtctgcccgattgaaacgccggaaggtccgaacatcgggctgatcaactccctg
gctgcttacgctcgcaccaaccagtacggcttcctcgagagcccgtaccgcgtggtgaaa
gagggtgtggtcaccgacgacatcgtgttcctgtccgccattgaagaagctgatcacgtg
atcgcgcaggcttcggcgaccatgaacgagcagaaagtcctgatcgatgaactggtggcc
gtgcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccttgatggacgtt
tcgccgaagcaggtagtttctgttgcagcgtcgctgattccgttcctcgagcatgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccaaccctgcgtgct
gacaagccgctggtcggtaccggcatggagcgtaacgtggctcgcgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactccgttgatgccagccgtatcgtggttcgt
gttgctgatgacgaagttgaaaccggcgaagctggtgtcgacatctacaacctgaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaaaggtgat
cgcgttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgagctggct
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctttccgagcgtgtggtgcaggaagaccgcttcaccacgatccacattcaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcgctgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacatcctggtaggcaaggtcactccgaaaggcgagacccaactg
actccggaagaaaaactgctgcgcgcaatcttcggtgaaaaagccagcgacgttaaagac
acttccctgcgcgtgccaacgggcaccaaaggcactgtcatcgacgtacaggtcttcacg
cgtgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagtcccagctggacgag
atccgcaaggatctgaacgaagagttccgcatcgttgaaggcgcgaccttcgagcgtctg
cgttccgctctggtaggccacaaggctgaaggcggcgccggcctgaagaaaggtcaggac
atcaccgacgaagtactcgacggtcttgagcatggtcagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaagatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtggtcctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccggatggtcgaagagcagcgcaaagtcgctgaactgcgtacc
ttcctggacgagatctacaaccagatcggcggtcgtaacgaagatctggacagcttctcc
gatcaggaaatcctggatctggcgaagaacctgcgtggcggtgttccaatggccactcca
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgtccagtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgcg
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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