KEGG   Pseudomonas fluorescens Pf0-1: Pfl01_5283
Entry
Pfl01_5283        CDS       T00283                                 
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
pfo  Pseudomonas fluorescens Pf0-1
Pathway
pfo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Pfl01_5283 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfo03019]
    Pfl01_5283 (rhlE)
Messenger RNA biogenesis [BR:pfo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Pfl01_5283 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA
Other DBs
NCBI-ProteinID: ABA77020
UniProt: Q3K5D4
Position
5944390..5946258
AA seq 622 aa
MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDMRNPRNARGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDID
NFGNRVDYVPKQAPTGGRNRRPGAPAQGAGSGAPRGGQSQGRQNGPRNSNGSSTGTPPGK
RSGPRNGAPRDGQGRRDENSRNRRPARDDQQRAEPAVQNPRSSGPKIMHKESKADRFPTP
EQLDQLPSRPRGEKPALLTRNR
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgtcctttgcttccctcggtctctccgaggctttggtccgcgctatcgaagacgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtaccggtaaaaccggcggtttcgcccttccgatcctg
gagcggctgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtgctggtcttgaccccgacccgcgaactcgcggcgcaggttcacgacagtttcaag
atctacgcccgcgacctgaaattcgtcagcgcgtgcatcttcggcggcgtcggcatgaat
ccgcaggttcaggccatgtcccgtggcgttgacgtgctggtggcgtgccccggtcgtctg
ctcgacctgtgcggccagggcagtgtcgatctgtcccacgtcgaaattctcgtgctcgac
gaagccgaccgcatgctcgacatgggcttcgtccacgacgtgaagaaagtcctcgcccgt
ctgccggccaagcgccagaacctgctgttctcggcgaccttctccaaagacatcacggat
cttgccggcaaactgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgaacaacgcgtcttccgtctgccggccagccacaagcgtgcactgctg
gcccacctgatcaccgctggcgcgtgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgtctggccgagtacctggacaaacacggcctgccggctgtggcgatccac
ggcaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccggtgaagtg
cgcattctggttgccaccgacatcgcggcacgcggtctggacatcgaccagttgccacac
gtggtcaacttcgaactgccgaacgtcgatgaagactacgtccaccgcatcggccgtacc
ggccgggccggtcgttcgggcgaggcgatctcgctggtcgcaccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagtaccatcgaggccgagaagcctgaagttcgcgagcgtccggacatgcgcaac
ccgcgcaatgcccgcggcccacgcggtgacggcccgaatggcggcggcggtggcggcggt
cgtaaagacaaaggcaaagacaagggcaaggaaaaaccggccggcgaacgtggcgagcgt
ccagcccgtcaacagaagccgcgcgaaggcaccccggcccgcgaacaacgccagccaagc
cagccgccacgcgccgctgctgatcgcgctccggacgagttcctcgacgacgatatcgat
aacttcggtaaccgcgtcgactacgtgccgaagcaggctccgaccggtggtcgcaaccgt
cgtccaggcgctccggcgcaaggcgcaggttcaggcgcaccccgcggcggtcagtcgcaa
ggtcgccagaacggcccgcgtaacagcaacggttcgagcaccggcacgccgccaggcaag
cgcagcggcccacgcaacggtgcaccgcgtgacggccagggtcgtcgcgatgaaaactcg
cgcaaccgccgcccggcccgtgatgatcagcaacgcgctgaaccggccgtgcagaacccg
cgcagcagcgggccgaagatcatgcacaaggaatcgaaagccgaccgcttcccgacccct
gagcagctggatcaactgccaagccgcccacgcggtgaaaaaccggccttgctgacccgc
aatcgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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