KEGG   Pseudozyma flocculosa: PFL1_02690
Entry
PFL1_02690        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03030  DNA replication
pfp03410  Base excision repair
pfp03420  Nucleotide excision repair
pfp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PFL1_02690
   03410 Base excision repair
    PFL1_02690
   03420 Nucleotide excision repair
    PFL1_02690
   03430 Mismatch repair
    PFL1_02690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfp03032]
    PFL1_02690
   03400 DNA repair and recombination proteins [BR:pfp03400]
    PFL1_02690
Enzymes [BR:pfp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PFL1_02690
    6.5.1.6  DNA ligase (ATP or NAD+)
     PFL1_02690
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PFL1_02690
DNA replication proteins [BR:pfp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PFL1_02690
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PFL1_02690
DNA repair and recombination proteins [BR:pfp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PFL1_02690
   NER (nucleotide excision repair)
    Other NER factors
     PFL1_02690
   MMR (mismatch excision repair)
    Other MMR factors
     PFL1_02690
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C eIF-3c_N
Other DBs
NCBI-GeneID: 19316807
NCBI-ProteinID: XP_007878395
UniProt: A0A061HAX3
Position
Unknown
AA seq 875 aa
MTGPQQTLGKFFERPPGAKKSPPQQQQLKSAFKKGQAKSSAEGPTAGPGASSSHSTSSSD
NAAAAVKEEDAAAAKEEAAAMPPQEKDAERRKKTSTKEEPARKKRRIIESDDDSEAEPEA
ATKPAVKQETSKPIPLPPSPKKEDVKEHKVASVFNKPKPSTMANGAKAAGKEASKRDSPP
DDDRGDGDDGNESESDAEGAEDDFEEDKEIEEEESKSAKKLAAIFQKPSQVKEGKVTWKE
GEPVPYAALVAAFSEIQATTKRLEITEILTQFLIRVIKRSPDNLLQVTYLCINRLCPDYE
GLELGIGESLLIKAIAQSTGREVPRIKKDLEAQGDLGLVALSSRKKQPTMFQVSSLKVPA
VFKQLREIAAVSGNKSQDRKIGIIKKLLASCQGEEPKFLIRSLEGKLRIGLAERSVLVSL
ARAVVISRLGKRVERMSQEELARKLEEGTELVKAVYSELPSYDLVVPALLASGTEGLRDA
CKLTPGVPLKPMLAKPTKAITEVLDRFEGKAFTCEYKYDGERAQVHYLDDGRLLVFSRNS
ENMSVKYPDLVEQIPRCLEPSVKSFVLDAEAAAWRKAEVDPQTGKAEPARLLPFQELSRR
KRKDVKAEDIKVKVKLFGFDLLYLNGQPLLGMSLAERRKLLRQHFKPVEDEFDFARSEDC
TSVEEISTFLENSVKEGCEGLMVKMLDGPDSTYEPSRRSMNWLKLKKDYLSGTGDSLDLV
VIGGYYGKGKRTNVYGAFLLACYDADSESYQSICKIGTGFTEADLDAHYTTLKALEITSK
KGYYDVGDAKPDVYFDAKVVWEVLTADLSLSPVYTAAKGLVDHRGISLRFPRFIRIRDDK
GPEDATGPEQIEAMYRAQAVNSSKAKGGDDDDGFW
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgaccgggcctcagcagaccctcggcaagttcttcgaacggcccccgggcgccaaaaag
tcgccgccgcagcagcagcagctcaagtcggcgttcaaaaagggccaggccaagtcatcg
gccgaagggccaaccgccggcccgggcgcctccagcagccacagcaccagcagcagcgac
aacgctgcagccgcagtcaaggaagaggacgcagcagcagcaaaagaggaggcagcggcg
atgcctccgcaagaaaaggacgccgagcgacggaagaagacgtcgaccaaggaggagccg
gcgcgcaagaagcgtcgcatcatcgagtcagacgacgactcggaggcggagcccgaggca
gccaccaagccagccgtcaagcaagaaacatccaagcccatccctctgccaccatcgcca
aagaaggaggacgtcaaggaacacaaggtggcgtcagtcttcaacaagcccaagccgtcg
accatggccaatggcgccaaggctgccggcaaggaggcgagcaagcgggacagcccgcca
gacgacgaccgcggcgacggcgacgacggcaatgagagcgagagcgatgcggagggcgcc
gaggacgattttgaggaggacaaggagatcgaggaagaggagagcaagagcgccaagaag
cttgccgccatcttccagaagccctcgcaggtcaaagagggcaaggtgacgtggaaggag
ggcgagccggtgccatacgctgcgctcgtcgccgccttttccgagattcaggcgacgacc
aagcgcctcgagatcaccgagatcctcacgcagttcctcatccgcgtcatcaagcggagc
ccggacaacctcctgcaggtcacgtacctgtgcatcaaccgcctgtgccccgactacgag
ggcctggagctgggcatcggcgagtcgctgctgatcaaggccattgcccagagcacgggc
cgggaggtgccgcgcatcaaaaaggatctcgaggcgcagggcgacctgggcctggtggcg
ctgagctcgcgcaaaaagcagccgaccatgttccaggtgtcgtcgctcaaggtgcccgcc
gtgttcaagcagctgcgcgagattgccgccgtgtccggcaacaagagccaggaccgcaag
attggcatcatcaagaagctgctggcgtcgtgccagggcgaggagcccaagttcctcatc
cgcagcctcgagggcaagctgcgcatcggcctggcggagcgctcggtgctcgtgtcgctg
gcgcgcgccgtcgtcatcagccggctcggcaagcgcgtcgagcgcatgtcgcaggaggag
ctggcccgcaagctcgaggagggcaccgagctcgtcaaggccgtgtacagcgagctgccg
tcgtacgacctcgtcgtgccggcgctgctggccagcggcaccgaggggctgcgcgacgcg
tgcaagctgacgcccggcgtcccgctcaagccgatgctggccaagccgaccaaggccatc
accgaggtgctcgaccgcttcgagggcaaggcgttcacgtgcgagtacaagtacgacggc
gagcgcgcccaggtccactacctcgacgacggccggctgctcgtcttcagccgcaactcg
gaaaacatgagcgtcaagtacccggacctcgtcgagcaaatcccgcgctgccttgagccc
agcgtcaagtcgtttgtcctcgacgccgaggcggccgcctggcgcaaggccgaggtcgac
ccgcagacgggcaaggccgagccggcgcggctgctgccgttccaggagctgagccggcgc
aagcgcaaagacgtcaaggccgaggacatcaaggtcaaggtcaagctgtttggcttcgac
ctcctctacctcaacggccagccgctgctcggcatgtcgctggcggagcgccgcaagctg
ctgcgccagcactttaagcccgtcgaggacgagtttgactttgcgcgcagcgaggactgc
acctcggtcgaggagatctcaacgttcctcgagaacagcgtcaaggagggctgcgagggc
ctcatggtcaagatgctcgacgggcccgactcgacctacgaaccaagccggcgaagcatg
aactggctcaagctcaaaaaggactacctgtccggcaccggcgacagcctcgacctcgtc
gtcatcggcggctactacggcaaaggcaagcgcaccaacgtctacggagccttcctgctg
gcatgctacgatgccgactcggagtcgtaccagtcgatctgcaagatcggcaccggcttc
accgaagccgacctcgacgcgcactacaccacgctcaaggcgctcgagatcacgtccaag
aagggctactacgacgtcggcgacgccaagccggacgtctactttgacgccaaggtcgtg
tgggaggtgctgacggccgacctgtcgctgagtccggtctacacggccgccaagggcctc
gtcgaccatcgaggcatctcgctgcgctttcctcggttcattcgcatccgcgatgacaag
ggcccagaggacgctactggtcctgagcagatcgaggccatgtaccgcgctcaggccgtc
aacagcagcaaggccaagggcggcgacgacgacgacggcttctggtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (38)   

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