KEGG   Pseudozyma flocculosa: PFL1_03907
Entry
PFL1_03907        CDS       T03141                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
pfp  Pseudozyma flocculosa
Pathway
pfp03013  Nucleocytoplasmic transport
pfp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PFL1_03907
  09122 Translation
   03013 Nucleocytoplasmic transport
    PFL1_03907
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfp03019]
    PFL1_03907
   03041 Spliceosome [BR:pfp03041]
    PFL1_03907
Messenger RNA biogenesis [BR:pfp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     PFL1_03907
Spliceosome [BR:pfp03041]
 Complex C
  Other components
   EJC/TREX
    PFL1_03907
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PFL1_03907
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 PD40
Other DBs
NCBI-GeneID: 19318014
NCBI-ProteinID: XP_007879621
UniProt: A0A061H829
Position
Unknown
AA seq 360 aa
MALTAPPSDAALFRERGITLPSFQNYKPSKELKGGHRLSVRGVAWSIDGRKLASCGADRS
VRVWTPERSVDVRASTELRGHTESVDQLAWSPTAPDQIATASADKSVRIWDIRSAKATQV
ISTPGSNINIAYHPHGHQVAVGDKADTISIIDVKMGRIVETVQDRSRGPVEEINEFTWSP
DGSLFLLTSGTGSIHIHDARNPLEGDANTAKGAATRWSRLHTMVAHTANVFCIEMDPSSR
YMATASADSMIGLWALDEWMSVRMSGSLSFPARSLSFSHDGEFLAAGGEDPWIDISSVAT
GNTVYKLPVTGMINTLAWHPSKLYLAYAGDEPPSTTASGGGGSAASSAAKDNGVIRIFGL
NT seq 1083 nt   +upstreamnt  +downstreamnt
atggcgctgacggcaccaccctccgacgccgccctgttccgggagcgcggcatcacactg
ccgtcgttccaaaattacaagccgtccaaggagctcaagggcggccaccgactcagcgtt
cgcggcgtcgcgtggtccatcgacggccgcaagctcgccagctgcggcgccgaccgatcc
gtgcgcgtatggacgcccgagcgcagcgtcgacgtgcgcgcttccaccgagctccgaggt
cacaccgagagcgtcgaccagctcgcctggagccccactgcgccggatcagatcgccacc
gcgtcggcggacaagtcggtcaggatatgggacattcgctcggcaaaggcgacgcaggtc
atttcgacgcccgggtccaacatcaacatcgcctaccacccgcacggacaccaggtggca
gtgggcgacaaggcggacacgatcagcatcatcgacgttaagatgggccggatcgtcgag
acggtccaggaccgcagccgcgggccggtcgaggagatcaacgagtttacctggtcgccc
gatggctccctcttcctcctcaccagcggcacgggcagcatccacatccacgacgcccgc
aacccgctcgagggcgacgccaacacggccaagggcgccgccacgcgctggtcccgcctc
cacaccatggtcgcccacacggccaacgtgttttgcatcgaaatggaccccagctcgagg
tacatggccaccgcctcggccgatagcatgattggcctgtgggccctcgacgagtggatg
agcgtccgcatgtccggctccctctcgtttcccgcccgcagcctgagcttctcgcacgac
ggcgagttcctcgcagccggcggagaggatccgtggatcgacatttcatcggtggcgacg
ggcaacacggtgtacaagctgcccgttacgggcatgatcaacacgctcgcctggcacccg
agcaagctctacctcgcctacgccggagacgagccgccctcgacgaccgccagcggcggc
ggaggaagcgctgcctctagcgccgcaaaggacaacggcgtcatccgcatctttggcttg
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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