KEGG   Pragia fontium: QQ39_08990
Entry
QQ39_08990        CDS       T03952                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
pfq  Pragia fontium
Pathway
pfq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QQ39_08990 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfq03019]
    QQ39_08990 (rne)
   03009 Ribosome biogenesis [BR:pfq03009]
    QQ39_08990 (rne)
Enzymes [BR:pfq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     QQ39_08990 (rne)
Messenger RNA biogenesis [BR:pfq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     QQ39_08990 (rne)
Ribosome biogenesis [BR:pfq03009]
 Prokaryotic type
  rRNA processing factors
   QQ39_08990 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 PNPase_C Nit_Regul_Hom
Other DBs
NCBI-ProteinID: AKJ42206
UniProt: A0A0G3CJN2
Position
complement(2042394..2045681)
AA seq 1095 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEQSLEAAFVDY
GAERHGFLPFKEISREYFSSNSSSGRPNIKEVLHVGQEVIVQVDKEERGNKGAALTTFIS
LAGSYLVLMPNNPRAGGISRRIEGDDRQELKEALDSLEIPNGMGLIVRTAGVGKSAEALQ
WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNIKVLDLAK
EHIAALGRPDFSSKIKSYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTA
IDINSARSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPIRHQREVEN
RLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLAL
SILRLIEEEALKDNTKEVDAIVPVQVASYLLNEKRESVNAIERRSGGKVRVVVVPNERMD
TPHYEVIRKKPGEESHVLSYMLPQLHEAETESEEETVHERKIPEQPALASFSLPTESAPV
EEKKVVTTAPAVTAPAAPGLFSRLVSGLKSILAPAETAPAQPEKAASEKSSYNQQDRRNN
NRRNNNRRDRNNDRNDRNGERNNDRNSDRNNDRQNRDNNQDSRRNNRQPQQATTDTAQNA
TATAPRDENRRETRAERQRRRNEDKRQQQTQTQQNEQVEASIVENVVVVEEEKPASVPAQ
RRQRRQVNQKVRVAAQTEQTESNSDAVKPETMIAMVEEVKLLPQPAAVNKSEEAGLTTES
DSDKNGYNNGNNTNDANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTVSPMPLATAAASP
ELASGKVFINYAALAVEQPKAFEPIEALEAANNAEKRITQPEIVVTSVVAETVESSVVNA
AEKVEVVVNEASTIVETPAAVAHVETQSDEVVSPVVEAPQESAVVEESVTVSNPEPQVVN
TITEPTTPVVATPSIHAGTSSAPAASPSYHAEPVVEAVVQQPTPIVEDVKSPVADAEVNT
INPVQVASSPVSRPVMPEAEVLAEQPVTVVSETVAVVETPATLPTEEFAGKGSAGGHAAT
NHAAAPAARPAPIDD
NT seq 3288 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgtagccttagttgac
gggcaacgtctgtacgatttagatattgaaagtccggggcacgagcaaaagaaagccaat
atttataaaggtaaaattacccgtgttgaacaaagtctggaagcagcatttgttgattac
ggtgctgaacgacacggtttcctcccatttaaagaaatttcccgcgaatatttctcctcc
aactcaagctctggtcgtccgaacattaaagaggttctgcacgtcggtcaggaagttatt
gttcaagttgataaagaagagcgtggaaataaaggtgcagcactaacaacctttattagt
ctggccggcagttatttagttctgatgcccaacaaccctcgcgccggtggtatttcccgt
cgtattgaaggtgacgatcgtcaggaactgaaagaagcattagattcactagaaattcct
aacggtatgggccttatcgtccgtactgctggcgttggtaaatccgctgaagcattacag
tgggatctttccttccgtttaaaacactgggaagcgatcaagaaagccgcagagagtcgc
cctgctccattcctgatccaccaagaaagcaacgttatcgttcgcgccttccgtgactat
ttacgcccggatatcggcgaaatcctgatcgacaatattaaagttctcgacctggccaaa
gaacatatcgccgctcttggccgtcctgacttcagcagcaaaatcaagtcttacaccggt
gaaattccgctgtttagccactatcaaatcgaatcgcaaatcgaatcagctttccaacgt
gaagttcgtttgccttccggtggctctatcgttatcgataccaccgaagccttaacggcc
attgatattaactccgcccgctctactcgcggtggtgatattgaagaaactgcctttaat
accaacctggaagccgcagatgagattgctcgccaattacgtcttcgtgacttgggtggt
ttaatcgttatcgactttattgatatgacgccaattcgtcatcagcgcgaagttgaaaac
cgtttacgtgatgccgttcgtcaggatcgtgcgcgcattcaaatcggccgtatttcacgt
tttggcctactggaaatgtcacgccagcgtctaagcccatctttgggagagtcgagccat
catgtgtgccctcgctgtagcggtaccggtaccgttcgcgataacgaatctctggcgcta
tcaattttacgtttaatcgaagaagaagcgttaaaagataacaccaaagaagttgatgct
atcgttccagttcaagttgcgtcttatctgttgaacgaaaagcgtgaatcagtgaatgcc
attgaacgtcgttccggtggtaaagttcgcgtggtggttgtgcctaatgaacgtatggat
acaccacattacgaagtcatccgtaagaaaccaggcgaagaaagccatgtattaagctac
atgttgccacaattgcatgaagcggaaaccgagtcggaagaagaaaccgtacacgagcgc
aaaatcccagagcaacctgcactggccagtttctcactgccgacagagtcagctccggtt
gaagagaaaaaagtggtcaccacagcacctgcggtaaccgcacctgctgcgcctggcctg
ttctctcgtttggttagcggtctgaaaagtatcttagcaccggccgaaactgctccagcc
caacctgaaaaggctgcgtcggaaaaatctagctataaccagcaagatcgtcgtaacaac
aaccgtcgcaacaataatcgtcgcgatcgtaataacgaccgcaatgaccgtaacggtgaa
cgtaacaacgaccgtaatagcgatcgtaataacgaccgtcagaatcgcgataacaaccaa
gattcacgtcgtaacaatcgtcagcctcaacaagcaacgaccgataccgctcagaatgcg
acagccaccgcccctcgcgatgagaaccgtcgtgaaactcgagcagaacgccagcgtcgc
cgtaacgaagataaacgtcaacagcaaacgcaaactcaacaaaatgagcaggtagaagcc
agcattgttgagaacgtagttgtagttgaagaagagaagcctgcatcggttccagctcaa
cgtcgtcaacgccgccaagtaaaccagaaagttcgtgttgcggcacaaactgagcaaaca
gaaagcaatagcgacgcagttaaacctgaaaccatgattgcaatggttgaagaggttaaa
ttgctaccgcaacctgctgcagtgaacaaatctgaagaagcaggactcactaccgagtct
gacagcgataagaatggttataataacggcaataataccaatgatgctaatggtatgccg
cgccgttctcgccgttcgccgcgtcaccttcgcgttagcggccaacgtcgtcgtcgttat
cgtgacgaacgttatccaaccgtttcaccgatgccattagctacagcagcggcatcacct
gaactggcatcgggtaaagtgtttatcaattacgcagcgttagccgttgaacaaccgaaa
gcgttcgaacctattgaagccttggaagcagcaaataacgccgagaagcgtattacacag
ccggaaatcgttgttaccagcgtcgtcgctgaaacagtggaatcctctgtcgtcaatgca
gcagaaaaagttgaagtggtagttaatgaagcttcaacaatagttgaaacaccggcagca
gtcgctcatgttgaaactcaatctgatgaagtggtttctccagtggttgaagcaccgcaa
gaatccgctgttgttgaagaaagtgttaccgtcagcaaccctgaaccacaggttgtcaac
acgatcacggaaccaacaacaccagtcgttgctacgccttctattcatgcaggtacgtct
tctgcgccggctgcatcaccttcatatcacgcagagcctgtggttgaagccgttgtacaa
cagccaaccccaatcgttgaagacgttaaatcaccagtagcggatgctgaagtgaatacc
attaaccccgttcaggttgccagttctccagtttccagacctgttatgcctgaagctgaa
gtattggcagaacaaccagtaactgtggtatctgaaacggtagccgttgttgaaacccct
gctactttacctactgaagaattcgcgggtaaaggttctgctggcggccatgcagccact
aatcacgcggctgcgccagcggcaagacctgctccgattgatgattaa

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