KEGG   Pragia fontium: QQ39_10280
Entry
QQ39_10280        CDS       T03952                                 
Name
(GenBank) RNA ligase
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
pfq  Pragia fontium
Brite
KEGG Orthology (KO) [BR:pfq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pfq03016]
    QQ39_10280
Enzymes [BR:pfq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     QQ39_10280
Transfer RNA biogenesis [BR:pfq03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    QQ39_10280
 Prokaryotic type
   tRNA splicing ligases
    QQ39_10280
SSDB
Motif
Pfam: RtcB DUF4402
Other DBs
NCBI-ProteinID: AKJ42428
UniProt: A0A0G3CR46
Position
complement(2336586..2337809)
AA seq 407 aa
MKPSIQVMNVEQGRPVKMWTQGVPVEDEAKRQLENTAKMPFIFKHIAVMPDVHLGKGSTI
GSVIPTVGAIIPAAVGVDIGCGMIAAKTSLHACDLPDNLSALRDAIERAVPHGRVVNRAK
RDKGAWGDVPEVVNRAWLQLDPDFKQIIDKYPKLKNTNNRVHLGTLGTGNHFIEVCLDEN
QAVWFMLHSGSRGIGNAIGNLFIELAKKDMQRHFINLPHQDLAYLVEGSEHYNDYVFAVD
WAQRYARLNRETMMNNVIAAARSVISKPFTLEMEAVNCHHNYVQKEQHFGQEVLVTRKGA
VSAQAGELGIIPGSMGARSFIVRGKGNQEAFCSCSHGAGRTMSRTEAKRRFSIEDQIKAT
EGVECRKDSDVIDEIPMAYKDIDAVMAAQSELVEIVHTLKQVVCVKG
NT seq 1224 nt   +upstreamnt  +downstreamnt
atgaaaccttcaattcaggtaatgaacgtagaacagggtcgtccagtgaaaatgtggact
caaggtgtaccggtagaagatgaggccaagcgtcaactagaaaatacggccaaaatgccg
tttatctttaagcatattgcggtgatgccggatgtgcatttagggaaaggatcgactatc
ggttcagtcattccaaccgttggggcgattatcccagctgcggttggtgtggatattggt
tgtggaatgattgctgcgaaaacgtcgctacacgcctgtgatttaccggataatctgtct
gctttacgtgatgctattgaacgcgccgtccctcatggacgcgtagtgaatcgggctaag
cgtgataagggagcctggggagatgtacccgaagtggtgaatcgtgcctggctacagttg
gatccagacttcaaacaaattattgataaatatccaaagctgaaaaataccaataaccgt
gtacatctggggacgttgggaaccggtaaccattttatcgaggtttgtctggatgagaat
caagccgtgtggtttatgttgcactccggttcacgaggcattggaaatgcgattggtaac
ttgtttattgagttggcaaagaaagatatgcagcgtcattttatcaatttgccccatcaa
gatttggcttatctggtagaaggtagtgaacattataacgactatgtatttgccgttgat
tgggcgcagcgctatgcccgtttaaatcgtgaaaccatgatgaataatgtgattgctgcg
gctcgtagcgtgattagtaagccgtttaccctagagatggaagcggtgaactgccaccat
aactatgtgcagaaagaacagcactttgggcaggaagttctggtaacccgtaaaggggcg
gtgagcgctcaagccggtgaactgggaattattcccggctctatgggagccagatccttt
attgttcgtggtaaaggtaatcaggaagccttctgttcatgtagccacggagctgggcgt
actatgagccgtaccgaagctaaacgtcgtttctctattgaggatcaaattaaggctacc
gaaggggttgaatgtcgtaaagatagcgatgtgattgatgagataccgatggcttataaa
gatattgatgccgttatggctgcccaatcagaattggttgaaatcgtacataccttaaaa
caggttgtttgcgttaaaggatag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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