KEGG   Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: PFREUD_20560
Entry
PFREUD_20560      CDS       T01252                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
pfr  Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Brite
KEGG Orthology (KO) [BR:pfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfr03032]
    PFREUD_20560 (topA)
   03400 DNA repair and recombination proteins [BR:pfr03400]
    PFREUD_20560 (topA)
Enzymes [BR:pfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     PFREUD_20560 (topA)
DNA replication proteins [BR:pfr03032]
 Prokaryotic type
  DNA Topoisomerases
   PFREUD_20560 (topA)
DNA repair and recombination proteins [BR:pfr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PFREUD_20560 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim HC2 Toprim_4 Toprim_2 Poly_export
Other DBs
NCBI-ProteinID: CBL57548
UniProt: D7GG87
Position
complement(2215850..2218636)
AA seq 928 aa
MATTPRRLVIVESPTKATKIAGYLGPGYVVESSRGHVRDLPTSAAEVPAKYKGQSWARTG
VNVDDDFAPIYVVSADKKSTIKQLKAELKNADELYLATDGDREGEAIAWHLLQELKPKIP
VKRMVFHEITPAAIQEAVKHPRTLDEDLVEAQETRRILDRLYGYEVSPVLWKKVMPRLSA
GRVQSVATRLIVDRERDRMAFRAASYWDIEAILDAGASATPRQFPARLVSLDGQRIAQGS
SFDSLGHAKSDVAVLDKPATDALSSALATAPFVVTAVEAKPYTRRPAAPFRTTTLQQEAG
RKLGFTTDRTMRVAQELYEDGYITYMRTDSVTLSGQAITAARDAITQLYGADYVPERPRI
YNSKVKNAQEAHEAIRPSGEHFRTPAQTGLRGDQFKLYELVWQRTVASQMADATGQQMTV
RIEATPTQRVALEGVTPQPVRTAQFTASGRTITFQGFLKAYVESSDKPEQAQARLPQLAA
EQKLDAAAINPEGHETKPPARFTEPSLVAKLEELDIGRPSTYASIIRTITSRDYVFKRGS
ALVPTWLAFAVTRLLEEHFSELVDYDFTAALEDHLDEIAKGDADRLAVLQSFYFGNNNAD
THEGLHELTNSLGDIDARALSTFHLGDLGSGIDVRVGRYGTYVQDEEEHRANVPEDMAPD
ELTVEAARELLAHTGGDERELGLDPTTHLAIVVKAGRFGPYVTEVLPDDDDAPAAKKSKV
KPRTASLFRTMDPATVTLDDALKLLSLPRVVGGEGEEQVTAQNGRYGPYLKKGSDTRSLP
SEESIFTTTMEQAAELFAQPKRRGRQAAAPLRELGEDPNSGKPVVVKDGRFGPYVTDGEY
NATLRKADSVEAITLDRAAELLAEKRAKGPAPKKRTTRKATAKKAAAAKKPAAKKPAAKK
PAAKKTASTAKPAAKKPAAKKSASTSTN
NT seq 2787 nt   +upstreamnt  +downstreamnt
gtggcaactactccgcgcagactcgtcatcgtcgagtcgcccaccaaggcgacgaagatc
gccggctacctgggccccggctatgtcgtggagtcgagccgtggccatgtgcgcgacctg
ccgaccagcgccgccgaggtgcccgccaagtacaagggccagagctgggcgcgcaccggc
gtcaacgtggacgacgacttcgcacccatctacgtggtgagcgccgacaagaagtccacg
atcaagcagctcaaggccgagctgaagaacgccgacgagctctacctggccactgacggt
gaccgcgagggcgaggccatcgcgtggcacctgctgcaggagctgaagccgaagatcccg
gtgaagcgcatggtcttccacgagatcaccccggccgccatccaggaggccgtcaagcat
ccgcgcaccctcgacgaggacctcgtggaggcacaggagacccgccgcatcctcgaccgc
ctctacggctacgaggtgagtccggtgctgtggaagaaggtcatgccccgcctgtcggcc
ggacgcgtgcagtcggttgccacccgcctgatcgtcgaccgtgagcgtgaccggatggcc
ttccgggccgcgtcctactgggacatcgaggcgatcctcgacgccggcgcctccgccacg
ccccgccagttccccgcccgcctggtgagcctggacggccagcgcatcgcgcagggttcc
agcttcgactcgctgggccacgccaagtccgacgtcgccgtgctcgacaagccggccacc
gatgccctgtcgtcggcccttgccaccgcgccgttcgtggtgaccgccgtcgaggccaag
ccgtacacgcgtcgccccgcggcgcccttccgcaccaccacgctgcagcaggaggccggt
cgcaagctcggcttcaccaccgatcgcaccatgcgcgtggcccaggagctgtacgaggac
ggctacatcacctatatgcgtaccgactcggtgacgctgtcgggccaggcgatcaccgcc
gcacgggacgcgatcacccagctctacggcgccgactacgtgcccgagcgtccccgcatc
tacaactcgaaggtgaagaacgcccaggaggcccacgaggcgattcgtccctccggtgag
cacttccgcacgccggcccagacgggcctgcgcggcgaccagttcaagctctacgagctg
gtctggcagcgcaccgtcgcgtcgcagatggccgacgccaccggtcagcagatgaccgtg
cgcatcgaggccacgcccacccagcgggtcgcattggagggcgtgacgccccagccagtg
cgcaccgcacagttcaccgcctcgggccgcacgatcaccttccagggcttcctgaaggcc
tatgtggagtcgagcgacaagcccgaacaggcccaggcgcggctgccgcagctggccgcc
gagcagaagctcgacgccgccgcgatcaatcccgagggtcatgagacgaagccgccggcg
cgcttcaccgagccgagcctggtggccaagctcgaggagctcgacatcggtcgtccgtcg
acctatgcgtcgatcatccgcaccatcaccagccgcgactatgtgttcaagcgcggctcg
gcgctggtgcccacctggctggcgttcgccgtcacccgactgctcgaggagcatttctcc
gagctggtcgactatgacttcaccgcggcgctggaggaccacctcgacgagatcgccaag
ggcgacgccgaccggctggcggtgttgcagtcgttctacttcggcaacaacaatgccgac
acccacgagggcctccacgagctgacgaactcgctgggtgacatcgacgcccgggcgctg
tccaccttccacctgggcgacctcggctccggcatcgacgtgcgcgtgggtcgctacggc
acctatgtgcaggacgaggaggagcaccgcgccaatgtgcccgaggacatggctcccgac
gagctgaccgtcgaggcggcccgcgagctgctggcgcacaccggcggcgatgagcgtgag
ctcgggctcgaccccaccacgcacctggcgatcgtggtgaaggcggggcgcttcggcccc
tatgtcaccgaggtgctgcccgacgacgacgatgcgcccgcagcgaagaagtcgaaggtc
aagccgcgcacggccagcctgttccgcacgatggatccggccacggtgacccttgacgac
gcgctgaagctgttgtcgctgccgcgcgtggtcggcggtgagggcgaggagcaggtgacc
gcccagaacggacgctacggcccctacctgaagaagggttccgacacgcgctcactgccc
agtgaggagtcgatcttcaccacgacgatggagcaggcggccgaattgttcgcccagccg
aagcggcgtggacgtcaggcggcggcccccttgcgtgagctgggggaggacccgaattcg
ggcaagccggtggtggtgaaggacggccgcttcggcccctatgtcaccgatggtgagtac
aacgcgaccctgcgcaaggccgattcggtggaggcgatcacgctcgaccgcgccgccgag
ttgttggccgagaagcgggccaagggtccggcgccgaagaagcgcaccacccgcaaggcg
acggcgaagaaggcggcagctgccaagaagccggcggccaagaagccggcagcgaagaag
ccagcagccaagaagacggcgtccacggccaagccggcagccaagaagccggcggcgaag
aagtcagccagcacgtcgacgaactga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (33)   

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