KEGG   Pseudomonas fluorescens SBW25: PFLU_4714
Entry
PFLU_4714         CDS       T00899                                 
Symbol
rne
Name
(GenBank) Ribonuclease E (RNase E) (EC
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
pfs  Pseudomonas fluorescens SBW25
Pathway
pfs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PFLU_4714 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfs03019]
    PFLU_4714 (rne)
   03009 Ribosome biogenesis [BR:pfs03009]
    PFLU_4714 (rne)
Enzymes [BR:pfs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     PFLU_4714 (rne)
Messenger RNA biogenesis [BR:pfs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PFLU_4714 (rne)
Ribosome biogenesis [BR:pfs03009]
 Prokaryotic type
  rRNA processing factors
   PFLU_4714 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 TcdA_TcdB
Other DBs
NCBI-ProteinID: CAI2798879
UniProt: C3K0P3
Position
1:5188519..5191746
AA seq 1075 aa
MCAERRFRQPGNRRYNMKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKG
RITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEK
EERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGL
IVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDI
GEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPS
GGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDF
IDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRC
NGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR
ARIVILPNDHLETPHFEVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQE
AAVKTAPARANAPVPTEVAAPVAAPAALPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKP
ATERPARNEERRNGRQQSRNRNGRRDEERKPREERAPREERAPREERAPREAREETPTVA
REERAPREERAPRTPRAPREDRKPRGEREERVRELREPLDAAPAVAAEAVSEERPARQPR
EERAPREERQPRAPREERQPRAEQAAAASEEEVLTGEEQPQEDGQEGAEGDRPRRRSRGQ
RRRSNRRERQRDANGNVIEGSEETGENAEAATSEPTGAELAAGLAVTAAVASSVISAPAE
AQAHEQAERATAAVEETVIAETPVAETPIVEAPAVEASVAEAPVVEAPAVEATTPIEAPV
VPEVEVVPEVEVAPVQEAQPEVEVAAVEEAPAIEPQPVTETVVEAPVVEAAPEVREVREE
QTAFQWTAEPAAPVEAPEPAPVVEDAPAPVAEVVVAEPAPVVEPAPVVEPAPVVEAPVVA
EVAAPVVEAAPVSALTENGRAPNDPREVRRRRKEAEAAAAAAAAQEAEHESKPLV
NT seq 3228 nt   +upstreamnt  +downstreamnt
gtgtgtgccgaacgccgtttccggcagcccggaaaccgacggtacaacatgaaaagaatg
ctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagatggccaacgcctc
tacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaatatctataaaggc
cgtattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctccgagcgc
cacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagcgcctgaaggc
cgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgaaaaa
gaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctggcaggccgttac
ctggtcctgatgccgaacaacccacgtgccggcggtatttcccgtcgcatcgaaggcgaa
gagcgcaacgaactgcgtgaagcgctgaacggcctgatcgcaccggccgacatgggcctg
atcgttcgcactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgactac
ctgctgcaactatggaccgccatcaaagaagcgtccctggatcgttccgcgccattcctg
atctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggacatc
ggcgaagtgctgatcgacagcgttgaagcacaggacgaagccctgaccttcatccgccag
gtcatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtcccgctgttcaac
cgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtcgaactgccttcc
ggtggctccattgtgatcgacccgaccgaagccctggtgtccatcgacatcaactcggcg
cgcgccactaaaggtagcgacatcgaagaaaccgccctgcagaccaacctggaagcggct
gaagaaatcgcccgccagctgcgcctgcgcgacatcggcggcctgatcgtgatcgacttc
atcgacatgacccccgccaagaaccagcgcgccgtggaagagaaagtccgcgaatgcctg
gaagctgaccgtgcccgcgtacaggttggccgcatctcgcgcttcggcctgctggaaatg
tcccgtcaacgcctgcgtccgtccctgggcgaaagcagcggcatcgtctgcccgcgttgc
aatggcaccggcatcatccgtgacgtcgagtcgctgtccctggcgatcctgcgcctgatc
gaagaagaagccctgaaagaccgcaccgccgaagtccgcgcacaagtgccgatcccggtc
gccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacccgt
gcccgtatcgtgatcctgccgaacgatcacctcgagacgccgcacttcgaagtgcagcgc
ctgcgtgatgacagcccggaagcccacagcggccagtccagctatgaaatcgccgctgcc
gccgccgaagtggaagaagtccagccggccgctgcgacccgcaccctggttcgccaggaa
gccgccgtgaagaccgcccctgcccgcgccaacgcaccggtgccgactgaagtggctgca
ccggttgccgcaccggccgccctgcctgagccaagcctgttcaagggcctggtgaagtcg
ctggtcagcctgttcgcgaccaaggaagagcccgttgctccggttgtggttgaaaaacct
gccaccgaacgcccggcgcgcaacgaagagcgtcgcaacggtcgccagcagagccgtaac
cgtaacggtcgccgtgacgaagaacgcaagcctcgcgaagaacgtgcaccgcgtgaagaa
cgcgcgccacgtgaagagcgtgcgcctcgcgaagcccgtgaagaaaccccgaccgtagcc
cgtgaagaacgcgcaccgcgtgaagagcgtgcaccacgcaccccacgtgctccgcgtgaa
gatcgcaagccacgtggcgagcgtgaagaacgtgtgcgtgaactgcgcgagccgctggat
gccgctccggccgtcgccgccgaagccgtcagcgaagaacgcccggctcgccagccgcgt
gaagaacgcgcgccacgtgaagaacgccaacctcgcgctccgcgtgaagagcgtcaacca
cgtgccgagcaagcggctgccgccagcgaagaagaagtactgaccggcgaagagcaaccg
caggaagacggtcaggaaggcgccgaaggcgatcgtccacgccgccgctcccgtggccag
cgtcgtcgcagcaaccgtcgtgagcgtcagcgtgatgccaacggcaacgtgatcgaaggc
tcggaagagaccggcgaaaacgcagaagccgctaccagcgaaccgacgggcgccgaactg
gctgccggcctggctgttaccgctgccgttgccagctcggtcatcagcgcacctgctgaa
gcccaggcccacgagcaggctgagcgcgctactgctgctgtcgaagagaccgtcatcgca
gaaacacctgttgccgagacgccaatcgttgaagcacctgctgttgaagcatcggttgct
gaagcgccagttgtagaagcgccggctgtcgaagccaccaccccaatcgaagcgccggtt
gtgccggaagtggaagttgttccggaagtagaagttgctccggttcaagaagcccagcca
gaagttgaagtggcagcggttgaagaagcaccggcgattgaacctcagccagtgactgaa
acagtcgttgaagctccggttgtcgaggcggctccagaagttcgtgaagttcgtgaagaa
cagaccgccttccaatggactgccgagcctgccgcgccggttgaagcgccagaacctgcc
ccagtggtagaagacgcgccggcaccggttgccgaagtcgtggttgccgagccagccccc
gtggttgagcctgctccggtcgttgaacctgcacccgtggttgaagcgccggtggttgcc
gaagttgccgcgccagtggttgaagcagcaccggtcagtgccctgaccgaaaacggccgt
gccccgaacgacccacgtgaagtgcgtcgtcgtcgcaaggaagctgaagccgctgcagcg
gctgccgcagcacaggaagcagagcacgagagcaaacctctcgtctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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