KEGG T01501: Psefu

Pseudomonas fulva: Psefu_3727

Entry

Psefu_3727        CDS       T01501

Name

(GenBank) protein of unknown function UPF0027

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

pfv Pseudomonas fulva

Brite

KEGG Orthology (KO) [BR:pfv00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pfv03016]
    Psefu_3727
Enzymes [BR:pfv01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Psefu_3727
Transfer RNA biogenesis [BR:pfv03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Psefu_3727
Prokaryotic type
   tRNA splicing ligases
    Psefu_3727

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

AEF23688

UniProt:

F6AFQ5

Position

4011449..4012675

AA seq 408 aa
MQTKTYNLLEVANGKPIKLWTQGVPVEEDAKQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTIGAIIPAAVGVDIGCGMIAARTSLTASDLPDNLAGLRAAIEKAVPHGRSNTRG
GRDRGAWENVPEMADHAWSALSERFKAITDKYPRLEKTNNRKHLGTLGTGNHFVEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPDRDLAYFEEGSQHFADYVEAV
GWAQDFAKQNRALMMHAVVAAARGVIAKPFEVALEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKKLFTVEDQIKA
TAHVECRKDADVIDEIPMAYKDIDQVMDAQRELVEVMHTLRQVVCVKG

NT seq 1227 nt +upstreamnt +downstreamnt
atgcaaaccaagacctacaacctgctggaagtcgccaacggcaagccgatcaaactgtgg
acgcaaggcgttccggtagaggaggacgccaagcagcagttgatgaacaccgcgaagatg
cccttcatcttcaagcacctggccgtgatgccggacgtgcacctgggcaagggttcgacc
attggcagcgtgatccccacgatcggtgcgatcatcccggcagcggtcggggtggacatc
ggctgcgggatgatcgccgcgcgcacctcgctgaccgcctccgacctgccggataacctg
gccggtctgcgcgccgccatcgagaaggccgtgccccacgggcgaagcaatacccgtgga
ggccgagaccggggcgcctgggaaaacgtgccggagatggccgaccatgcctggtcggcg
ctgagcgagcgcttcaaggcgatcaccgacaagtacccgcggctggagaagaccaacaac
cgcaagcacctgggaaccctgggaaccggtaaccacttcgtcgaggtgtgcctggacgaa
gcgaaccgggtctggttcatgctgcacagcggatcgcgcggcgtgggtaacgccatcggc
aacctgttcatcgaactggcccaggccgatatgcgccagcacatcgccaatctgccggac
cgcgacctggcctacttcgaggaaggcagccagcacttcgccgactacgtggaggcggtg
ggctgggcccaagacttcgccaagcagaaccgcgcgctgatgatgcacgcggtggtcgcg
gcggcccgcggggtgatcgccaagccgttcgaggtcgccctggaagcggtcaactgtcac
cacaactacgtgcagaaggaacgtcacttcggtgaagaggtgctggtgacccgcaaaggc
gcggtgtcggcgaagaaaggcgagctgggcatcatccccggctccatgggcgccaagagt
ttcatcgtgcgcggcctgggcaacgaggaagcgttctgctcgtgcagccacggcgccggc
cgcaccatgagccgcaccaaggcgaaaaagctgttcaccgtggaagaccagatcaaggcc
acggcccacgtcgaatgccgcaaggacgccgacgtgatcgacgaaatcccgatggcctac
aaggacatcgaccaggtcatggacgcccagcgcgagctggtagaagtgatgcacaccttg
cggcaggtggtgtgcgtaaaaggataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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