KEGG   Pseudomonas simiae PCL1751: PF1751_v1c15420
Entry
PF1751_v1c15420   CDS       T03766                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
pfw  Pseudomonas simiae PCL1751
Brite
KEGG Orthology (KO) [BR:pfw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfw03032]
    PF1751_v1c15420 (topA)
   03400 DNA repair and recombination proteins [BR:pfw03400]
    PF1751_v1c15420 (topA)
Enzymes [BR:pfw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     PF1751_v1c15420 (topA)
DNA replication proteins [BR:pfw03032]
 Prokaryotic type
  DNA Topoisomerases
   PF1751_v1c15420 (topA)
DNA repair and recombination proteins [BR:pfw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PF1751_v1c15420 (topA)
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_4
Other DBs
NCBI-ProteinID: AJP51247
Position
1719374..1721995
AA seq 873 aa
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLSPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAN
VRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIEEEFGKKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTTPAKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVAASDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDTLKLITLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPESGMRANQPVMT
DIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq 2622 nt   +upstreamnt  +downstreamnt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagtaaggagccagccgccaagcgcggcaaggcggctgcgggcgaa
ggtccggtgctcagccctaaagagaaagcgcgcaagcagctggtctcgcgcatgggtgtg
gacccggatcatggctggaaggccaagtacgaaatccttccaggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgggaagccatcggcggcgacgacagccgc
tacaagcgtgtggtgttcaacgaaatcaccaagaaggccatccaagaggccttctccaaa
cccggcgaactggacatcgaccgcgtcaacgcccaacaggcccgtcgtttcctcgaccgc
gtcgtgggttacatggtctcgccactgctgtgggccaagatcgcccgtgggctgtccgcc
ggccgtgtgcaatcggttgcggtgaagctggtggtggagcgtgagcgcgaaatccgtgcg
ttcatccccgaagagtactgggaagtccacgccgatctgggcactgccaagggcgccaac
gtgcgctttgaagtggcccgcgagaaaggcgaggccttcaagccgctgaacgaagcccag
gccatggcggcgctggaaaagctcaagtcttccagttacagcatcgtcaagcgtgaggac
aagccgaccagcagcaagccatcggcaccgttcatcacctccaccctgcaacaggccgcg
agcaaccgcctgggctttggggtgaagaaaaccatgatgatggcccagcgcttgtacgaa
gccggctacatcacttacatgcgtaccgactccaccaacctgtcggtggacgcggtcgcg
atggcgcgtacttatattgaagaagagttcggcaagaagtacctgcccgagaaaccgaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgatccgtccttccgacgcc
aataccacgcctgccaagctgagcggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccagttcctggcctgccagatgctgccggcgcaatacctgtccaccaccgtc
acggtggcggcttctgacttcgagctgcgtgccaagggccgtatcctcaagttcgacggc
tatacccgtgtgatgccgcaaatcgccaagcctggcgatgacgatgtgctgccggacatg
gcccagggcgatacgctgaagctgatcacgctcgacccgtcccagcacttcaccaagccg
ccggcgcgttattcggaagccagcctggtgaaagagatggaaaaacgcggtatcggtcgt
ccttcgacctacgcggcgatcatctccaccattcaggaccgtggctacgttgcgctgcac
aaccgtcgtttctattcggaaaagatgggcgacatcgtcaccgaacgcctgtcggaaagc
ttctccaacctgatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccagggcgaacgcgattggaaaaacgtgctggacgagttctacggcgacttcaagaaa
aaactcgaagtagctgaaagccctgaaagcggtatgcgcgccaatcagccggtgatgact
gacatcccgtgccagacctgcggccgcccgatgcagattcgtacggcgtccaccggcgtg
ttcctcggttgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaac
ctggtgccgggtgacgaaatcgctgccgatgacgagggggaatccgagtcgctggtactg
cgtggcaagcaccgttgcccaatctgcagcacggcgatggacgcctacctgctggatgaa
aagcacaagctgcatatctgcggtaacaacccggattgcaacggctacgagattgaagag
ggcacctatcgcatcaaaggctacgaaggtccgagcctggaatgcgacaagtgtggcagc
gagatgcagctcaagactggccgtttcggcaagttcttcggctgcaccaacccgacgtgc
aagaacacccgcaaactgctgaaaagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcctgaactcaagtgtgagaaggtcaacgacacctacatcctgcgtgacggcgct
tcggggctgttcctggctgccagccagttcccgaaaaaccgcgagacccgtgcaccgctg
gtgctggagatcgtgccgcacaaggacgagatcgatccgaagtaccacttcctgtgtgaa
gcgccgaagaaggatccggatggtcgcccagccgtgatccgttacagccgcaagaccaag
gagcagtacgtgcagaccgaagtggacggcaagcctactggctggaaagcgttctacgac
ggcggcaagtggaaggtcgaggacaagcgccagggcgcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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