KEGG   Pseudomonas simiae PCL1751: PF1751_v1c16950
Entry
PF1751_v1c16950   CDS       T03766                                 
Symbol
deaD
Name
(GenBank) cold-shock dead-box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pfw  Pseudomonas simiae PCL1751
Pathway
pfw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PF1751_v1c16950 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfw03019]
    PF1751_v1c16950 (deaD)
   03009 Ribosome biogenesis [BR:pfw03009]
    PF1751_v1c16950 (deaD)
Enzymes [BR:pfw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PF1751_v1c16950 (deaD)
Messenger RNA biogenesis [BR:pfw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PF1751_v1c16950 (deaD)
Ribosome biogenesis [BR:pfw03009]
 Prokaryotic type
  rRNA helicases
   PF1751_v1c16950 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 BscB_a-b
Other DBs
NCBI-ProteinID: AJP51398
Position
1882134..1883807
AA seq 557 aa
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaatattcttgcagcc
gtcgcagcgaccggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggcaaggacatgatcggccaggcgcaaaccggtaccggcaaaaccgccgcgttc
gctttgcctatcctgcattgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccgggcgtaaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccacgccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcgctgccaccgacc
cgtcagaccgttctgttctcggccaccctgccgcagtcgatccgtgccattgccgagcgt
cacctgcgcgatccagagcacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctagaagccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgactctctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgacccagagtcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgcgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaagtccgcctgccggatgcccaagccgttctg
gatgctcgcatcaagaaactgaccaacagcctgtcgccactggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcagccctgctgcgcaaggcgaccaatggtcaagccttgaccctggcagctatcgag
aaagaacgtccactggtgccgaacagcgcgccgcgcggtgatcgtccagagcgttccggc
gaccgtccagaccgtggtgatcgcgagcgtcgtgctccagtgccattggctgaaggccgt
gctcgttgccgtaccgcgctgggcgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaatgagggtggcctggcacgtgaagccatcggtcgcatccaggttcgtgac
agcttctccctggtggagctgccggaagacggtctggaaaaactgctggccaagctgaaa
gacactcgcgttgccggtaagcagctgaagctgcgtcgctaccgcgaagattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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