KEGG   Pestalotiopsis fici: PFICI_11394
Entry
PFICI_11394       CDS       T04924                                 
Name
(RefSeq) TFIIH basal transcription factor complex p47 subunit
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
pfy  Pestalotiopsis fici
Pathway
pfy03022  Basal transcription factors
pfy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pfy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PFICI_11394
  09124 Replication and repair
   03420 Nucleotide excision repair
    PFICI_11394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfy03021]
    PFICI_11394
   03400 DNA repair and recombination proteins [BR:pfy03400]
    PFICI_11394
Transcription machinery [BR:pfy03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PFICI_11394
DNA repair and recombination proteins [BR:pfy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PFICI_11394
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 VWA
Other DBs
NCBI-GeneID: 19276407
NCBI-ProteinID: XP_007838166
UniProt: W3WUJ6
Position
Unknown
AA seq 456 aa
MADSDGEYHGASDDELQVNSSHNARGKSKKDGRKTQAAWENVTRTWDIVEENEDGTIKRV
ETAEAKKRARLMKDTTPLQRGIIRHLVLVLDMSFAMAEKDLLPNRHELTMAYAGEFVREY
FEQNPISQLAILGMRDGIAIRISDMSGNPADHLERLTRWTKQEPQGNPSLQNALEMCRGA
LYHTPSHGTREVVIVYGALMSSDPGDIHETISAVIKDRIRVSVVGIAAQVAICAELCAKT
NGGDDSSYTIALHEQHLRELLLDVTTPPATRTTEQSNASLLMMGFPSRTITTGETISYCA
CHNRPNREGYTCTRCSSRVCRLPAECPGCGLTLILSTHLARSYHHLFPLRNWVDVPWSEA
RKSTACYACLSAFPQYDKKHVEQHGAPIGLSESGRYACEVCGNHFCIDCDLFAHEVLHNC
PGCQSDTRGSAMSSQELETNGDANGRMNGTAMDIDP
NT seq 1371 nt   +upstreamnt  +downstreamnt
atggccgactccgacggcgaataccatggcgcctccgacgatgagctgcaggtcaactct
tcccacaatgcgcgcggcaaatcaaaaaaggacgggcgcaagacccaagcggcatgggag
aacgtaacgagaacatgggacatagtcgaggagaacgaggatggaaccatcaagcgagtc
gaaacggccgaagcaaagaagcgcgcgcgcctgatgaaggataccacccctctgcagcgc
ggcatcatacgtcatcttgtcctggtcctcgacatgtcctttgccatggcagagaaggac
ctgttgcccaacagacacgagctcacaatggcatatgcgggggagtttgtcagggaatat
tttgaacaaaatccaatctcccaactggccatcctcggcatgcgcgatggtattgccatc
agaatcagcgatatgagcggcaatcccgccgatcacctggaaaggttgacccggtggaca
aagcaggagccgcaggggaacccgagtctacagaatgccctggaaatgtgtcggggtgcg
ttatatcacacaccatcccatggcacaagggaagttgttatagtctacggtgccctcatg
tccagtgaccctggtgacattcacgagaccatcagcgccgtcatcaaggacaggatccgt
gtctctgtcgtcggtattgctgctcaagtagccatttgcgcagagctatgcgccaagacc
aatggaggagatgattctagttacactatagcactgcacgagcagcatcttcgcgaattg
ctgctcgatgtcacaacaccgccagccactcgaacgacggagcaaagcaatgcaagtctg
ctcatgatgggcttcccatcgagaacaatcaccacgggcgagaccattagctattgcgcc
tgccacaacaggccaaaccgggagggttatacctgtacgcggtgcagctcgcgtgtttgt
cgtttgccggccgagtgtcccggttgcggcctaacactcattctctccacccatcttgcg
cgatcatatcaccatctgttccctctacggaactgggtagatgtgccttggtcggaagcg
cgcaagtcgacggcgtgttatgcctgtctcagtgccttcccccaatacgacaagaaacac
gttgaacaacacggtgcccccattggcttaagcgaatccggaaggtatgcctgcgaggtt
tgcggaaatcatttttgtatcgactgcgatctcttcgctcacgaggtgttacacaattgc
cccggatgtcagagtgacacacggggctcggctatgtctagtcaggagctggagacgaac
ggcgacgccaacggccgtatgaatggtacggccatggacattgatccttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (32)   

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