KEGG T04285: AV641

Pseudomonas fragi: AV641_07670

Entry

AV641_07670       CDS       T04285

Name

(GenBank) RNA pseudouridine synthase

K06177

tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

Organism

pfz Pseudomonas fragi

Brite

KEGG Orthology (KO) [BR:pfz00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pfz03009]
    AV641_07670
   03016 Transfer RNA biogenesis [BR:pfz03016]
    AV641_07670
Enzymes [BR:pfz01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     AV641_07670
    5.4.99.29  23S rRNA pseudouridine746 synthase
     AV641_07670
Ribosome biogenesis [BR:pfz03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    AV641_07670
Transfer RNA biogenesis [BR:pfz03016]
Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    AV641_07670

SSDB

Motif

Pfam:

PseudoU_synth_2

Other DBs

NCBI-ProteinID:

AMB78952

Position

complement(1634845..1635480)

AA seq 211 aa
MPLSNIHIIHQDAGVLVVNKPTLLLSVPGRAEDNKDCLITRLQENGYPEARIVHRLDWET
SGIILLARDADTHRELSRQFHDRETEKAYTALAWGQPELDSGSIDLPLRYDPPTKPRHVV
DHEFGKNALTFWKVLERCGDYCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHPQALA
AWPRLCLHASMLSFTHPQTGERLRFECPAPF

NT seq 636 nt +upstreamnt +downstreamnt
atgccgttgtcgaacatccacattatccatcaggacgctggcgttctggtcgtcaacaag
ccgaccctgctgctttccgtgccaggccgggctgaagacaacaaagactgtctgatcacc
cgcctgcaagagaacggctatcccgaggcgcgcatcgtccatcgcctggactgggaaacc
tcggggatcattttgctggcccgtgatgccgatacccatcgcgagttgtcgcgacagttt
cacgaccgcgaaaccgaaaaagcctacaccgcgctggcctggggtcagcccgaactggac
agcggcagcattgacttgccattgcgttacgacccgccgaccaaaccccggcatgtggtc
gaccacgagttcggcaaaaacgccctgactttctggaaagtgctggagcgatgcggcgac
tactgccgggttgaactgacgccgatcaccggtcgctcgcaccagttgcgcgtgcatatg
ctgtctatcggccacccgttgttgggcgacggactgtacgcccacccccaggcgctggca
gcctggccgcgcctgtgtctgcacgccagcatgcttagcttcacccacccgcaaacgggc
gagcgcctgcgctttgagtgcccggcacctttctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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