KEGG   Photobacterium gaetbulicola: H744_2c2948
Entry
H744_2c2948       CDS       T03698                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pgb  Photobacterium gaetbulicola
Pathway
pgb03030  DNA replication
pgb03410  Base excision repair
pgb03420  Nucleotide excision repair
pgb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pgb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    H744_2c2948
   03410 Base excision repair
    H744_2c2948
   03420 Nucleotide excision repair
    H744_2c2948
   03430 Mismatch repair
    H744_2c2948
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pgb03032]
    H744_2c2948
   03400 DNA repair and recombination proteins [BR:pgb03400]
    H744_2c2948
Enzymes [BR:pgb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     H744_2c2948
DNA replication proteins [BR:pgb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     H744_2c2948
DNA repair and recombination proteins [BR:pgb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     H744_2c2948
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     H744_2c2948
   MMR (mismatch excision repair)
    DNA ligase
     H744_2c2948
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      H744_2c2948
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT DZR_2
Other DBs
NCBI-ProteinID: AJR09599
UniProt: A0A0C5WX41
Position
2:complement(3320724..3322739)
AA seq 671 aa
MSHDIQQQLDELRELLAYHGHRYYVEDNPEIPDVEYDRMMQQLLAIEAENPELVTVDSPS
QRVGGKPLDGFTQITHEIPMLSLDNAFNDDDLHAFEKRMLDRLLSEPSLTYCCEPKLDGL
AVSLMYENGVLTQAATRGDGTTGENITENVRTIRSIPLKLRGEGWPERLEVRGEVFMPKK
GFEALNEKALKKGEKTFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVVEGIELVPSQ
YDRLVQLKGWGLPMCPEIRRLANMGEVIAYHQEIGNKREALPYEIDGVVIKVDDIAIQQR
LGFVARAPRWAIAYKFPAQEELTTLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIARLGVMVGDTVVIRRAGDVIPQIASVVESRRPADAMPIVFPESCPVCESKVERVE
GEAVARCSGGLFCQAQRKEALKHFVSRKALDVDGCGEKIIEQLVDREMVATPADLFKLSA
GVLTVLERMGPKSAQKLVDSLSASKQTTLPRFLYSLGIREVGEATAANLASHFETLPAIE
SASKEKLIEVQDVGEIVAAHVYNFFREEHNLAVINELIEVGIHWPAIVKRDADVELPLDG
KTVVLTGSLSQLTRSEAKAALQNLGAKVTGSVSKKTDLLVAGEAAGSKLVKAQELGIEVW
DEQALVDFMAR
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgagccacgacattcagcagcagctcgatgagctgcgcgaactacttgcctatcacggt
caccgctattacgtagaagacaacccggaaataccggatgtggaatacgaccggatgatg
cagcagttgctggcgattgaggcggaaaatccagagctagtgacggttgattcaccgagc
cagcgtgttggtggtaagccgcttgacggctttacccagatcacccatgaaatcccaatg
ttgtcactggacaatgccttcaatgacgatgatcttcacgcgtttgaaaagcgaatgctg
gatcgcctgttgtctgagccttcccttacctactgctgtgagccgaagctagatggcctg
gctgtgagtttgatgtatgagaacggggtactgacacaggctgcgacccgcggtgatggc
accacgggtgaaaacattaccgaaaatgttcgcaccatccgctcgataccattgaagctc
cggggtgagggctggcctgagcggttggaagtccgcggcgaagttttcatgccgaaaaaa
ggctttgaggcgctgaatgaaaaagcactcaaaaaaggagagaagacttttgccaatccg
cgtaacgcggcagcgggcagtctgcgtcagttggactctaagatcaccgcaacccgacct
ttgagtttttatgcctattccgtgggcgtggtcgaaggaatcgagctggtcccaagtcag
tatgaccgcctcgtgcagctcaaaggctggggattgccgatgtgtcctgagatccgccgg
cttgccaatatgggtgaagtgattgcttaccatcaggaaatcggcaacaaacgtgaagcg
ctgccttatgaaattgatggcgtagtgatcaaggttgacgatatcgctattcagcagcgg
ctcggctttgttgcccgggccccgcgttgggctatcgcgtataagttcccggcgcaggaa
gagctgacgacacttaacaacgtcgagttccaagtcggccgcaccggtgccatcaccccg
gtggcaaaactggaacctgtgtttgtcggtggggtgacggtaagtaatgccaccctgcac
aatgccgatgaaattgcccgccttggcgtcatggttggagataccgtggtgatccgccgt
gccggtgatgtgatcccgcagattgcttctgtggttgaatctcgccgtccggctgatgcc
atgccgattgtcttcccggaatcttgcccggtgtgtgaatccaaggttgaacgggtcgag
ggtgaagccgttgcccgttgctccggtggccttttctgtcaggcacagcgcaaagaagcc
ttgaagcactttgtctctcgtaaagcgctggatgtggatggctgtggtgaaaagatcatt
gagcagttggtggatcgcgaaatggtggcaaccccggctgatttgttcaagctttcggcc
ggggtattgacggtactggaacgaatggggccgaagtccgcgcaaaaactggtggattcc
ttgtccgcttccaaacagactacgctgccgcgtttcttgtattcactcggcattcgagag
gtgggtgaggcaacagccgctaatttggcctcgcacttcgaaaccttgccagccattgag
tctgcgagtaaagaaaagctgatagaggtacaggacgtaggtgagatcgttgctgcccat
gtctacaatttcttccgggaagagcacaacctggccgtgatcaacgagcttatcgaggtg
ggtattcactggccagcgattgtaaagcgcgatgctgatgttgaattgcctttagatggc
aagacggtggtcttgaccggtagtttgtctcagcttacgcgctcggaggctaaagctgcc
ctgcaaaaccttggtgccaaagtgacgggcagtgtatcgaagaagactgacttgctggtg
gctggggaagctgctgggtcaaaacttgttaaggctcaagagcttggcattgaggtttgg
gatgagcaggcactggtcgatttcatggctcgttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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