KEGG   Paenibacillus graminis: PGRAT_24565
Entry
PGRAT_24565       CDS       T03325                                 
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
  KO
K01925  UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
Organism
pgm  Paenibacillus graminis
Pathway
pgm00470  D-Amino acid metabolism
pgm00550  Peptidoglycan biosynthesis
pgm01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:pgm00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    PGRAT_24565 (murD)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    PGRAT_24565 (murD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:pgm01011]
    PGRAT_24565 (murD)
Enzymes [BR:pgm01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.9  UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
     PGRAT_24565 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:pgm01011]
 Precursor biosynthesis
  Amino acid ligase
   PGRAT_24565 (murD)
SSDB
Motif
Pfam: Mur_ligase_M MurD-like_N Mur_ligase_C Pyr_redox_3 2-Hacid_dh_C Pribosyltran
Other DBs
NCBI-ProteinID: AIQ70445
UniProt: A0A089MDL8
Position
complement(5409880..5411298)
AA seq 472 aa
MEHPDQYRGKEVVVLGLAKSGVQVAKVLHERGAAVTVNDKKERDQSPEASELESLGISVI
CGGHPEGLIHPGVSLVVKNPGIPYSVPPVQKALELGIEVVTEVEVAYHLCAAPMIGITGS
NGKTTTTTWVGRMLDAAGMSPIVAGNIGTPLCQAAQEAHADNWMVVELSSFQLKGTKAFR
PKVGCLLNVAETHLDYHGGMEDYIASKAKLFANQEPSDTAVLNWDDPVCRELVPYIKAAI
LPFSMTEELVQGVFVRPAFVPDTDDGLKRMIVYRDYSESETEIAAVDSIGLPGRFNVENA
LAACGIAIAAGADPAGLAEVLANFRGVEHRLEYVADKAGAAYYNNSKATNSKATSMALAS
FRKPVVLIAGGLDRGSDYMELLPVLGGIKALVALGQTKDKLAAVAGMAGVKRIISVDNGE
SAAAVLQEAVREASALAEAGDIVLLSPACASWDMFTSYEERGRIFKEAVHNL
NT seq 1419 nt   +upstreamnt  +downstreamnt
atggagcatccagatcaataccgcggtaaagaagtggtcgtcctgggcctggccaaaagc
ggcgtccaggtggccaaggtgctgcatgagcgcggcgcggccgtaacggttaacgacaaa
aaagaaagagatcaaagtcccgaagcttccgaactggagtctttgggaatttctgttata
tgcggcggtcatccggagggattgattcatccgggcgtgagccttgtggttaagaacccg
gggattccctattccgtgcctcctgttcaaaaagcgctggaactgggcatcgaggtagtg
accgaggtggaggtagcctaccacctgtgcgcagcgccaatgattggcattaccggttcg
aacggcaagacgacgacaaccacctgggtgggccgtatgctggacgctgcgggaatgagc
cctatcgtggccgggaacatcggcacacccctctgccaggccgcacaggaggctcacgca
gacaactggatggttgtcgagcttagcagctttcagctcaaaggcacgaaagctttccgt
cctaaggtgggctgtctgctgaatgtggcagagacccatctggattatcatgggggaatg
gaggattacatcgcctccaaggccaagctgtttgccaatcaggagccaagcgatactgcg
gtgctgaactgggatgatcctgtctgccgggagctggttccttatatcaaggcggcaatt
ctcccgttctccatgactgaggaactggttcagggggtctttgtccgtcctgcctttgtt
ccggataccgatgatgggcttaagcggatgattgtctaccgggattattccgagagtgag
acggaaattgccgctgttgattcgatcggcctgccgggccgtttcaatgtggagaatgcg
ctggctgcttgcgggatagccatcgctgcaggtgcagaccctgccgggctggcggaagtg
ctggcaaatttcagaggcgtggagcacaggttggagtatgtggcggataaagcgggagct
gcgtattacaacaactccaaagcgactaactccaaagcgacctccatggcgctggcttcc
ttccggaagccggtggttctgattgccggcgggctggaccgcggttccgactatatggag
ctgctgcctgtcctcggcggtatcaaagcccttgtggcgctggggcagaccaaggacaag
ctggcagccgtagcgggcatggcaggagtaaagcgcattatctccgtcgataatggggag
agcgccgccgccgtgctgcaagaagccgtgcgggaggcttccgctctggcggaagcggga
gatatcgtgctcctgtctcctgcatgcgccagttgggatatgtttacatcctatgaggag
cgcgggcgtatttttaaagaggcggtgcataacctttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (25)   

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