KEGG   Paraburkholderia graminis: CUJ91_08090
Entry
CUJ91_08090       CDS       T05548                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
pgp  Paraburkholderia graminis
Pathway
pgp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pgp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CUJ91_08090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgp03021]
    CUJ91_08090
   03019 Messenger RNA biogenesis [BR:pgp03019]
    CUJ91_08090
Transcription machinery [BR:pgp03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CUJ91_08090
Messenger RNA biogenesis [BR:pgp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CUJ91_08090
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB ATPase_2 AAA_25 AAA_22 Phostensin_N
Other DBs
NCBI-ProteinID: AXF07892
Position
PHS1_A:complement(1808468..1809736)
AA seq 422 aa
MHLSELKTLHVSELIEMANGLEIESANRLRKQELMFAILKKRAKTGDTIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEVLQKIWVLRKFIHDMDEVESMEFLLDKIRQTKSNSEFFDMMRRGG
GS
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgcatttatccgagcttaagactctgcacgtgtccgaattgatcgagatggccaatggc
ctcgagatcgaaagtgcgaaccgcctgcgcaagcaggaattgatgttcgccattctaaaa
aaacgagccaaaacgggcgacacgattttcggcgacggcacgctcgaagtgctgccggac
ggcttcggcttcctgcgttcgccggaaacctcctatctcgccagcacggatgatatttac
atcagcccgtcgcaaatccgccgcttcaacctgcatacgggcgacacgatcgaaggcgaa
gtacgcacgccgaaagacggcgaacgctatttcgcgctggtgaaggtggacaaggtcaac
ggccagccgccggaggcctcgaagcacaagatcatgttcgaaaacctgacgccgctgcac
ccgaacaaggtgctgctgctcgaacgtgaaatgcgcggcgaagaaaatgtcacgggccgc
atcatcgacatgatcgcgcctatcggcaaaggccagcgcggcctgctcgtcgcgtcgccg
aagtccggcaagaccgtgatgcttcagcatatcgcgcacgccatcaagcagaaccatccc
gacgtcgtactgtttgttctgctgatcgacgaacgtccggaagaagtgacggaaatgcag
cgttcggtggcgggcgaagtgatcgcatccacgttcgacgaacccgccgcacgtcacgtg
caggtcgccgaaatggtgatcgaaaaggccaagcgcctcgtcgaaatgaaaaacgacgtg
gtgattctgctcgactccatcacgcgtctcgcgcgcgcatacaacacggttgtgccggct
tcgggcaaggtgctcacgggcggtgtcgacgcgaacgcgctgcaacggccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggttcgctgaccatcatcggcacggcgctg
atcgaaacgggcagccgcatggacgacgtgatttacgaagagttcaagggcaccggcaac
atggaagtgcacctggaacgccgcctcgccgagaagcgcgtgtatccgtcgatcaatctg
aacaagtccggcacgcgtcgcgaagaactgctgatcaagcccgaagtgctgcaaaaaatc
tgggtgctgcgcaagttcattcacgacatggacgaagtcgagtcgatggaattcctgctc
gacaagatccgccagaccaagagcaactccgaattcttcgacatgatgcgtcgtggcggc
ggcagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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