KEGG   Paraburkholderia graminis: CUJ91_11415
Entry
CUJ91_11415       CDS       T05548                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
pgp  Paraburkholderia graminis
Pathway
pgp02024  Quorum sensing
pgp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pgp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CUJ91_11415
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CUJ91_11415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgp03019]
    CUJ91_11415
   03036 Chromosome and associated proteins [BR:pgp03036]
    CUJ91_11415
Messenger RNA biogenesis [BR:pgp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CUJ91_11415
Chromosome and associated proteins [BR:pgp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CUJ91_11415
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AXF08458
Position
PHS1_A:complement(2580304..2580540)
AA seq 78 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDSEQS
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgtaaagagcat
gtgccggtgtcgatctacctggtcaacggcatcaagcttcaagggaacatcgaatcgttc
gaccagtacgtcgtgttgctcaggaatacggtcacccagatggtctacaagcacgcaatc
tcgactgtcgtgccagcccgtccggtgaatttccacccggattccgaacagtcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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