KEGG   Puccinia graminis: PGTG_17024
Entry
PGTG_17024        CDS       T02226                                 
Name
(RefSeq) hypothetical protein
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
pgr  Puccinia graminis
Pathway
pgr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pgr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PGTG_17024
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgr03019]
    PGTG_17024
Enzymes [BR:pgr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     PGTG_17024
Messenger RNA biogenesis [BR:pgr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PGTG_17024
  mRNA degradation factors
   3'-5' decay
    Pan complex
     PGTG_17024
SSDB
Motif
Pfam: UCH_1 PAN2_N RNase_T VHP Zn_Tnp_IS1595
Other DBs
NCBI-GeneID: 10529283
NCBI-ProteinID: XP_003335789
UniProt: E3L495
AA seq 1728 aa
MPSAPWKAYCNTFLGEISSLSFDPYTDLLWTANPSGTVVSHFLPTTTLPPSDQDRRITRY
TSFKSHTYRSPSTELLLAERGVLSLADKSLKFTNRRGIPYWFLSTAFQDACSMAFTAPKS
AELIIGGAKPELVLLNASTGALVRRIDISQSGKSTLNSAQPSTGFSPTTHLRRSQSLICC
GARSGTVTLRDPVTLKEEHSMMTHYAGLEQMETEGNYLVTCGYSLKQGHPVRDPLVKVFD
VRALRPLAPITFSSSPAHVRFHPRMSSTLFITSSTGQLQIIDLAHPIPNSSFYQLDVGTF
ITDMCISSSGDGLAYAEADGVVHLWTTAVGEMDLGDESVRSNTKPIKWSRGNMPIALPDS
VEESAPVQWTDETPLSSIGMPYYSTELFSVLPSENYITPYSPLYQRRALPDTDLSVRASH
HQSSNTTHEVFDGGGQKFEVQYISNPKKTKRYQASLPTQPIVSSSGRSATARVGSPSQNL
GQLIPNSKRKLSIPLFRSEKEKEKAKTLGRGKAHMEANLVGNESERDDEISFDMSLDDFH
EMPKWYRQVEIKYSKFGIEDFDFGFYNNTQYSGLETHIVNSYTNSLLQVLYHTLPVRKVA
ESHIALSCTTQNCMLCELGFLFKMLDDAQGVNCQTSNFSRAFSINQRAIALELMDHQHQE
FCLHQSQIMPRLGDQSTNTQKIPISSKSYSSLIQLCHHFLLDQIAEDASKISTDYPFESL
RSHPINTQIRTTNSTTSVATISNHLLPSPIGDIYTTRWQTTQSCPSCHHQISRTSFTKVI
EMTYPRKALSNEPKPSTDFCSILKNSMIRETTAKSLCSNCNQYTHQRWRRQPDDLGAGNK
ALPTVLALNTGVTNSEQFEIWLDRRAKSAFVSSSSTKPANLEDDSSSVNEHFLQPEIGIS
IEPLPDLPQETNTSSSCRISIGDNHPIKIPQNAVIYELRGLIVQIQSDDETPHLVSLIKV
NNHHKITSPSTTSTTLNLDDKPQSENGAGAGAWYLFNDFLVKKVSQEEALSFPACWKVPC
VLYYVRKDFDEVLDFTKLPANTVDKSILLKEINLSKCRDVNKIRHEVLKEDELPKKGDLV
AIDAEFVSLQQEEVDYKSDGTRLVRRPSQMTLARVSVLRGEGSKTGVPFIDDHIQTFEPI
ADYLTEFSGIRPGDLDLNASPHTLVPLKVAYKKLRLLVDLGCIFIGHGLSKDFRIINIHV
PPSQIIDTVDLYYIASRQRKLSLRLLSYLILRHDIQNAGTHDSIEDARTALQLYDIYRQL
NNEGVWKDELESVYRKGKEMGWKVPADKLRSPLPAPAIPPAPSPCTSATPKPPSSTTSST
VSGRNTAVQAPRFTPSTLSAASATYFPPAGIAASKPPNSRSLQPVVRQTLSSTSTPAADQ
GHAEPAASFYRSIPQNSQTKASPPAPNFGHSILGTLNQTGPSAYNNNNSNNSRTVTTTTV
FQRYTTAPPPVFEPKKKPPAFNPMAPSFVHSSSSSSSSSATSTNRPLMSTTSSGPSSSTY
THNGAQHEKKSHTGLPYHHHHTSLSHSSLGSASLPGSSIDTHSSGSSLEFFPSNNNTLIG
HPPRPNNNNNSNNSNELYSFHPLPHHHPHQQPQLPHQPLPLPASHVYSNPNPLPPHSPHN
ALHHHQHHQQHHHQVSNEFVYHHPHHHHPHPHHPHLFHQEQHFPIHSSSSSSSTSTPSNP
TTSSNTTAALSNHHQLHSPITSSTHSPSSNPNLSSLLSGSHNEFNFIG
NT seq 5187 nt   +upstreamnt  +downstreamnt
atgccatcggcaccgtggaaggcatactgtaataccttcctcggtgaaatttcctcgctg
agtttcgacccatacaccgatttactatggacagccaatcccagcggaaccgtcgtctca
cacttcttacctacaaccaccctcccaccatccgatcaggatcgaagaatcacccgctac
acctctttcaagtctcacacctaccgatccccttccactgaactcctgctcgccgaacgt
ggggtcttgagcttggccgacaaaagcctcaagtttaccaatcgcaggggtatcccatat
tggttcttatcaacggcctttcaagatgcttgctccatggcattcaccgctcccaaatcc
gccgaactcatcatcgggggtgccaagccggaattggtactactcaatgccagcaccggt
gcactggttcgcaggatcgacatcagtcagtcgggcaaatccaccctgaattcggcacag
ccatccaccgggttctctccaacgactcacctcagaagatctcaatccctcatctgctgt
ggtgcgcgttcgggtacggtcactctacgcgatccggtcacccttaaggaggaacattcg
atgatgactcattatgctggattggaacagatggaaactgaaggtaactatctcgttaca
tgcggatattcactcaaacagggacaccccgtacgtgatccgctcgtcaaagtctttgat
gttcgggccctcagacctctagcaccgatcactttttcctccagtccggcccacgttcga
ttccatcctcgcatgtcgtccaccctctttatcacttcttccaccggacaacttcaaatc
atcgacttggctcatccgatcccaaactcttccttctaccaactggatgtgggcactttc
atcacggacatgtgtatatcgagctctggagatggactagcttatgccgaggcagatgga
gttgtacacctttggaccactgctgtgggcgaaatggatctaggagacgaaagcgtccga
agtaatacaaaacccatcaaatggagtcgaggtaatatgccgattgcgttaccagattca
gtcgaggaatctgctccggtccaatggacagacgaaactccgcttagttcgatcggcatg
ccatactattcaaccgagctgttttcagtcttgccaagtgaaaattacattaccccatac
tcccctctttaccaacgcagagcactcccagataccgatctctccgtgcgtgcctctcat
catcagtcctctaatacgacccatgaagtttttgacgggggcgggcagaagttcgaagtt
caatacatctcaaatcctaagaagacaaaacgctaccaagccagtctgcccacccagccg
atcgtctcctcgtctggtcgttctgcaactgccagagtaggttcaccatcccagaatcta
ggccaattgatccccaactcgaaacggaaactcagcatccctctcttcagaagcgagaag
gaaaaagaaaaggccaaaacgctaggtcggggtaaggctcacatggaagctaaccttgtc
ggaaacgagtccgaaagagatgatgagatttcctttgatatgagtctcgatgattttcat
gaaatgcccaaatggtaccgtcaagtcgaaatcaagtacagtaaattcggcatcgaggac
ttcgactttggcttttacaataatactcaatatagcggtcttgagactcacattgtgaat
tcatacaccaactcactcttgcaggtcctgtaccacacactccccgttcgaaaagtagca
gaatcacatatagctttatcctgtacaacgcagaattgcatgctatgtgaattagggttc
ttgttcaagatgcttgatgatgcccagggagtcaattgccaaaccagcaacttttcacgg
gccttttcgatcaatcaaagagcaattgccttggagttaatggaccatcaacatcaagag
ttctgcttacatcaaagtcaaatcatgcctcgactcggcgaccaatcgacgaatacccag
aagatcccgatctcaagcaaatcctactcgagtctcatccagctctgtcatcacttctta
ctcgaccaaattgccgaagacgctagtaagatctcgaccgattatcccttcgagagtttg
cgctcccatccgatcaacacgcaaatcaggacgaccaatagcacgacctcagttgcaacg
atctccaaccatcttctgccgtccccgatcggagacatctacacgacccgatggcagacc
acccaaagctgtccttcgtgccaccaccagatctcgcgcacctcgttcacgaaagtgatc
gagatgacctacccgcgcaaggcgctctcgaatgagcccaagccaagcaccgatttctgt
tcaatcctaaagaactcgatgatccgcgagacaacggctaagtcgctgtgttcaaactgt
aaccagtatacccaccaacgctggcgcagacagcccgatgatctgggcgctggtaacaaa
gctcttcccaccgtcctggcactcaataccggcgtgaccaactcggaacaattcgagatc
tggctcgaccggcgcgctaaatcggcctttgtatcatcatcatcaaccaaacccgcaaat
cttgaagacgacagctcgagtgttaacgagcatttcttgcagcccgaaattggcatctcc
atcgagccccttccggatcttcctcaggagaccaacaccagttcttcttgccgtatttct
atcggcgacaaccatcccatcaaaatcccccagaacgcagtgatctatgaactcagaggg
ttgatcgtacaaattcagtccgacgatgaaaccccccatcttgtctccttgatcaaagtt
aataatcatcacaaaatcacgagtccaagtactactagtactactcttaacttggacgat
aaacctcaatctgaaaatggtgcaggtgctggagcttggtatctgtttaacgatttcttg
gtaaagaaagtctcacaggaggaggccctaagttttcctgcttgctggaaggtcccttgt
gtactctattacgtccgaaaagattttgatgaggtcttggatttcactaagttacctgcg
aataccgtcgataaatcgatccttctaaaagaaatcaatttatcaaaatgtagggatgtt
aataaaattcgacatgaggtgttgaaggaggatgagttgccgaaaaaaggtgatctggta
gcgatcgatgccgaatttgtttctctacaacaggaggaagtagattataaatctgatggg
actaggttggtcaggaggcccagtcagatgacacttgcaagggtctccgtcctccggggc
gaaggaagtaaaactggggtgccttttatcgacgatcatatccaaaccttcgaacccatt
gctgattatctgaccgaattttccgggattcgtcctggcgatttggatcttaatgcttcc
cctcataccctcgtccccttgaaagtcgcttataaaaagttgagactgctcgttgatttg
ggttgtatttttattggtcatggactctccaaagatttccgaatcatcaacattcatgtc
ccgccctctcagatcatcgatacagtcgacctgtattatatcgcatctcgacagagaaag
ttgtcattaagactcctctcctatctgattttgaggcacgatattcaaaacgctggaact
catgattcgatcgaagacgcacggacagcattacagttatatgatatttaccgtcaattg
aacaatgaaggcgtttggaaagatgaactggagagtgtttatagaaaaggaaaagaaatg
gggtggaaagtgcctgccgacaaactccgatcgcctcttccagctccagctattccacca
gcgccttctccatgtacttcggcaactcccaaacccccatcatcaacaacctcatctaca
gtgagtgggcgtaatacggcagtgcaggccccgcgatttactccgtcgacactatccgcc
gcatcggccacttatttcccacccgctggtatcgctgcctctaaacctcccaactcgcgc
tcattacagcctgtcgtgcgacagaccctgtcctcgacttccaccccagcagctgatcaa
ggccatgctgagccggcagcctccttttatcggtctattcctcaaaactcgcagacaaaa
gcttcgcctccagcacccaatttcggccatagcatcctaggcacgctcaaccagaccgga
ccttcagcttacaataacaataatagcaacaactcacggaccgtgacaacaacgacggtc
tttcaaagatacacaactgcacccccgccagtctttgaaccaaagaaaaagccacccgcg
ttcaacccaatggctcccagttttgtccactcttcttcttcctcttcttcctcttcggct
acatctaccaaccgacctctgatgagtaccaccagttccggaccgagctcctcaacgtac
acccataacggggctcaacatgagaagaagagccatactgggcttccctatcatcaccat
cacaccagtctcagtcattccagcctcggctcggctagtctgcccggctcatccatcgac
actcactcgtccggctcctcgctcgaattcttcccctctaataataacaccctcatcgga
catcctcctcggcccaataacaacaacaacagcaacaacagcaacgagctctactccttc
catcctctcccccatcatcatcctcatcaacaaccacaacttccccatcagccacttcct
ctgcccgcgtctcatgtctactctaaccctaatccgctccctcctcattctccacacaat
gctcttcatcaccaccaacaccaccagcagcatcatcatcaagtctccaacgagttcgtc
taccatcatcctcatcaccatcacccccaccctcaccatcctcatctcttccatcaggaa
caacacttccctatccactcttcttcttcttcttcctctacttctactccttctaatcca
actacttcttctaacactacagcagctctctctaatcatcatcagcttcattctccaatt
acttcctctactcactcgccttcttctaatcctaatctctcgtctctcttgtctggctct
cataatgagttcaactttattggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (222)   
   KEGG ORTHOLOGY (1)   
   RefGene (218)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (236)   

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