KEGG   Polymorphum gilvum: SL003B_1731
Entry
SL003B_1731       CDS       T01458                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pgv  Polymorphum gilvum
Pathway
pgv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pgv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SL003B_1731 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgv03021]
    SL003B_1731 (rpoC)
   03400 DNA repair and recombination proteins [BR:pgv03400]
    SL003B_1731 (rpoC)
Enzymes [BR:pgv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SL003B_1731 (rpoC)
Transcription machinery [BR:pgv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SL003B_1731 (rpoC)
DNA repair and recombination proteins [BR:pgv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SL003B_1731 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Apocytochr_F_C RnfC_N
Other DBs
NCBI-ProteinID: ADZ70158
UniProt: F2J5S5
Position
1831308..1835507
AA seq 1399 aa
MNHEVMNLFNQQAPAQTFDQIRISLASPERIMSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFENYVVLEPGLTPLKPNQLLSEEEYLNAQDEYGEDAFTA
MIGAEAIREMLMSLDLERESEKLRVEIAEATTELKPKKLAKRLKVIEAFQQSGNRPEWMI
MTVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARTLMMSTNNILHPANGGPIIVPSQDIVLGLYYLSIMADGEPGEGMAFGNMGEIHHALS
NKVITLHTKIRGRYKSVDADGNPTSQIFETTPGRMMIAELLPKHHEVPFDTCNKLMTKKE
ISRMIDTVYRACGQKETVIFCDRIMQLGFKNACSAGISFGKDDMVIPDTKAKLVAETSAM
VAEYEQQYNDGLITQGEKYNKVVDAWAKCTDRVADEMMKRIQAVQVEEETGRQKPMNSVY
MMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIENPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIILEKDCGSQNGITVQAIVDAGQVIASLGQRVLGRT
AAEDVYNHATGEIIVPKGRMIDEKDVELIEAAKVQQIKIRSVLTCETETGVCATCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNVDGTIKMRNRA
VTRDSDGNLIAMVRNMSIVVVDSDGNERAVHRVTYGSKLHVDEGDAVKRGQRIAEWDPYT
RPMLSEVDGVVDFEDLVDGASVQETTDEATGITKRVVIDWRTSQRGQDLKPAIVVKTETG
EIAKLARGGDARLLLSVDAILSVQPGSRVKAGDVLARIPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEVSGTIRFGRDYKNKRRIIVEPHDESLEPVEYLIPKGKHFHLQEGDVIE
KGEYVLDGNPAPHDILAVKGVEALAAYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKIE
ITDPGETEFFAGEQVDRIDFEEVNERTIDAAKTPAKGVPVLLGITKASLQTRSFFSAASF
QETTRVLTEAAVNGKTDPLVGLKENVIVGRLIPAGTGGVMKRIRQIATHRDDLILDERRK
RSDESAAEGLLEDLSGAAE
NT seq 4200 nt   +upstreamnt  +downstreamnt
atgaatcatgaggtcatgaacctgttcaaccagcaggctcctgcacagaccttcgaccaa
atccggatttcgctcgccagccccgaacggatcatgtcttggtcctacggcgagatcaag
aagccggagacgatcaactaccggacgttcaagcctgaacgcgacggccttttctgcgcg
cgcatcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaggtcacgctgtcgcgcgtccggcgc
gagcgcatgggccacatcgagctggccgcgccggtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggcctgctgctcgacatgacgctgaaggatctggagcgcgttctc
tatttcgagaactacgtcgtcctggagccgggcctgacgccgctcaagccgaaccagctg
ctgtcggaagaggaatacctcaacgcgcaggacgagtacggcgaggacgccttcaccgcc
atgatcggcgcagaagcgatccgcgaaatgctcatgagcctcgatctcgagcgcgagagc
gagaagctgcgcgtggagatcgccgaggcgaccaccgaactgaagccgaagaagctggcc
aagcggcttaaggtgatcgaggcgttccagcagtcgggcaaccgtcccgaatggatgatc
atgaccgtgatcccggtcattccgccggacctgcgtccgctggtgccgctcgacggcggc
cggttcgcgacttcggacctgaacgacctctaccgtcgcgtgatcaaccgcaacaatcgc
ctgaagcgcctgatcgagctgcgcgcgcctgacatcatcatccgcaacgagaagcggatg
ctgcaggaatccgtcgacgcgctgttcgacaacggtcgccgcggacgcgtcatcacgggt
gcaaacaagcgtccgctgaagtcgctcagcgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcaccgtgggt
ccggagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcgactcgacgccaagggcttctcctcgacggtgaagcaggccaag
aagctggttgagaaggagcgtccggaagtctgggacatcctcgacgaggtcatccgcgag
cacccggttctgctgaaccgcgcgccgacgctgcaccgcctcggcatccaggcgttcgag
ccgatcctgatcgaaggcaaggcgatccagctgcacccgctggtctgctcggccttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctggaagcccagctt
gaagcgcgcacgctgatgatgtcgaccaacaacatcctgcatccggcgaacggcggcccg
atcatcgtgccgagccaggacattgtgctcggtctctactatctgtcgatcatggccgac
ggcgagccgggagagggcatggccttcggcaacatgggcgagatccatcatgcgctctcc
aacaaggtcatcacgctgcacaccaagatccgcggccgctacaagtcggtcgatgcggac
ggcaatccgacctcgcagatcttcgagacgacgccgggccggatgatgatcgccgaactg
ctgccgaagcatcacgaggttcccttcgacacctgcaacaagctgatgacgaagaaggaa
atctcccggatgatcgacaccgtctaccgcgcctgcggtcagaaggagacggtcatcttc
tgcgaccggatcatgcagctcgggttcaagaacgcctgcagcgccggcatttcgttcggc
aaggacgacatggtcattccggacaccaaggcgaagctggtggcggagacgtcggccatg
gtcgccgagtatgagcagcagtacaacgacggcctgatcacgcagggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgcacggaccgcgtcgccgacgagatgatgaagcgc
attcaggcggttcaggtcgaagaggagaccgggcgccagaagccgatgaactcggtctac
atgatgtcgcactcgggtgcccgcggctcgccggcacagatgaagcagctcgccggcatg
cgcggcctgatggccaagccgtcgggtgaaatcatcgagaacccgatcatctcgaacttc
aaggaaggcctgtcggttctggagtacttcaactccacgcacggcgcccgcaagggcctg
gccgacactgcgctgaagaccgcgaactcgggctacctgacccgccgcctcgtcgacgtg
gcgcaggactcgatcattctggaaaaggattgcggttcgcagaacggcatcacggtccaa
gcgatcgtcgacgccggccaggtgatcgcgagcctcggccagcgcgtgctcggccgcacg
gccgcggaggacgtctacaaccacgccaccggcgagatcatcgtgcccaagggccgcatg
atcgacgagaaggacgtggaactgatcgaggcggctaaggtccagcagatcaagatccgc
tcggtgctcacctgcgagaccgaaaccggcgtttgcgcgacctgctacggccgcgacctg
gcgcgcggcaccccggtcaacatgggcgaggcggtcggcgtcatcgcggcccagtcgatc
ggcgagccgggcacccagctcacgatgcgtaccttccacatcggcggtaccgcccaggtg
gtcgacagctcgttcatcgaatcgaacgtcgacggcacgatcaagatgcgcaaccgcgcg
gtcacccgcgacagcgacggcaacctgatcgccatggtccgcaacatgtcgatcgtcgtg
gtcgatagtgacggcaacgagcgcgcagtgcaccgtgtcacctacggctccaagctgcat
gtcgacgagggcgatgcggtcaagcgcggccagcggatcgccgaatgggatccgtatacc
cggccgatgctgtcggaagtcgatggcgttgtcgatttcgaggacctggtggacggtgcc
tcggtgcaggaaaccaccgacgaggcgaccggcatcaccaagcgcgtggtcatcgactgg
cgcacttcgcagcgtggccaggacctcaagccggcgatcgtcgtcaagacggaaaccggg
gagatcgccaagctggcccgcggcggcgatgcccgcctgctgctgtcggtggatgcgatc
ctctcggtgcagcccggcagccgggtcaaggccggcgacgtgctcgcccgtatcccgttg
gaaagcgcgaagacgaaggacatcaccggcggtctgccgcgcgtggccgaactcttcgag
gcgcggcggccgaaggaccatgcgatcatcgccgaggtgtccggcacgatccggttcgga
cgcgactacaagaacaagcggcggatcatcgtcgagccgcatgacgagtcgctggagccg
gtcgagtacctgatcccgaagggcaagcacttccacctgcaggaaggcgacgtcatcgag
aagggcgagtacgtcctcgacggcaacccggcgccgcacgacatcctcgcggtcaagggc
gtggaagcgcttgcggcctatctggtcaacgagatccaggaggtctaccggctacagggc
gtggtgatcaacgacaagcacatcgaggtgatcgttcgccagatgcttcagaagatcgag
atcaccgatccgggcgagaccgagttcttcgccggcgagcaggtcgatcgcatcgacttc
gaggaggtcaacgagcggacgatcgatgcggccaagactccggcgaagggcgtgccggtg
ctgctcggcatcaccaaggcgagcctgcagacccgatcgttcttctccgcggcctccttc
caggagacgacgcgcgtcctcaccgaggcggcggtcaatggcaagaccgacccgctggtc
ggcctgaaggagaacgtcatcgtcggacgcctgatccctgccggtaccggcggcgtgatg
aagcggatccggcagatcgcgacccatcgcgacgatctgatcctggacgagcgccgcaag
cgttccgacgaaagcgccgccgagggtctgctggaagacctgtccggcgctgccgaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (66)   

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