KEGG   Pseudoalteromonas translucida TAC125: PSHAa0002
Entry
PSHAa0002         CDS       T00282                                 
Symbol
dnaN
Name
(GenBank) DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III
  KO
K02338  DNA polymerase III subunit beta [EC:2.7.7.7]
Organism
pha  Pseudoalteromonas translucida TAC125
Pathway
pha03030  DNA replication
pha03430  Mismatch repair
pha03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PSHAa0002 (dnaN)
   03430 Mismatch repair
    PSHAa0002 (dnaN)
   03440 Homologous recombination
    PSHAa0002 (dnaN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pha03032]
    PSHAa0002 (dnaN)
   03400 DNA repair and recombination proteins [BR:pha03400]
    PSHAa0002 (dnaN)
Enzymes [BR:pha01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PSHAa0002 (dnaN)
DNA replication proteins [BR:pha03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PSHAa0002 (dnaN)
DNA repair and recombination proteins [BR:pha03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PSHAa0002 (dnaN)
SSDB
Motif
Pfam: DNA_pol3_beta_2 DNA_pol3_beta_3 DNA_pol3_beta HSP20
Other DBs
NCBI-ProteinID: CAI85116
UniProt: Q3IDE9
Position
I:1556..2659
AA seq 367 aa
MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLAVENGQLSMTGTDLEIELVASVFVG
DDIADTKLTLPAKKLLDICKSLPDGSDLTLSLQEHQLLLTSGKSRFSLTTLAAEDFPNLE
QWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIKTVATDGHRLAIA
QKQLKQSLNTQRQLIIPRKGVQEIMRLMVADEELVTIQFGANHIRIIDIEFTFTSKLVDG
RFPDYRRVLPRGGDKVITANREWLRSAFQRVSILSNEKFRGVRLNLSNGLLKITANNPEQ
EQAEEVVEVGYEGADLEIGFNVSYVLDVLNTLKTEDVLFTLADSNSSALIEGAGDEEAMY
VVMPMRL
NT seq 1104 nt   +upstreamnt  +downstreamnt
atgcaaataacaatatcaagacaacagtttttaaagccattagtgcaagtatcgggcgct
attgagcgtaagcatacattgccaattttatctaacgtattgttagcagtagaaaacggg
caactttcaatgacaggtaccgaccttgaaattgaactcgttgcaagcgtgtttgtaggt
gatgatattgccgatactaagttaacattaccggctaaaaaattactcgatatttgtaaa
agcctaccagatggttcagacctaacgttaagcttacaagagcatcagttattactaacc
agcggtaaaagtcgtttttcgttaacgaccttagccgccgaagactttcctaatttagaa
cagtgggatggcgaagttgagtttcaactaacgcgtttagagctgcgaaaattactagaa
agcacgcatttttcgatggcgaatcaagacgtacgttactatttaaatggtatgtcgttt
gaagtagacaatactgacattaaaacagtggccactgatggacatcgcttagctattgca
caaaagcaattaaagcaatcgcttaatacgcagcgtcagctaattatacctcgtaaaggg
gtgcaagaaattatgcgccttatggtagccgacgaagaactagtcactattcagtttggt
gctaatcatattcgtattatcgatatagagtttacctttactagtaagttagttgatgga
cgctttcctgattaccgtcgtgtgttacctcgtggtggcgataaagtcattactgctaat
cgcgaatggttacgtagtgcgtttcagcgagtctctattttatctaacgaaaagtttaga
ggtgtgcgtttaaacttatccaatggtttgttaaaaatcactgctaataaccctgagcaa
gaacaagctgaggaagtagtagaggttggttacgaaggcgccgacctagaaataggcttt
aacgtttcttatgtacttgatgtattaaacacattaaaaacagaagatgtactgtttaca
ttggccgattcaaacagcagcgcactaattgaaggtgcaggcgatgaagaagcaatgtac
gtagttatgcctatgcgtttataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (59)   

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