KEGG   Pseudoalteromonas translucida TAC125: PSHAa1426
Entry
PSHAa1426         CDS       T00282                                 
Symbol
ihfB
Name
(GenBank) putative integration host factor (iHF), beta subunit, site-specific recombination
  KO
K05788  integration host factor subunit beta
Organism
pha  Pseudoalteromonas translucida TAC125
Brite
KEGG Orthology (KO) [BR:pha00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pha03032]
    PSHAa1426 (ihfB)
   03036 Chromosome and associated proteins [BR:pha03036]
    PSHAa1426 (ihfB)
   03400 DNA repair and recombination proteins [BR:pha03400]
    PSHAa1426 (ihfB)
DNA replication proteins [BR:pha03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    PSHAa1426 (ihfB)
Chromosome and associated proteins [BR:pha03036]
 Prokaryotic type
  Nucleoid associated proteins
   IHF (integration host factor)
    PSHAa1426 (ihfB)
DNA repair and recombination proteins [BR:pha03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      PSHAa1426 (ihfB)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 PqqD HU-CCDC81_euk_2 Cac1_C
Other DBs
NCBI-ProteinID: CAI86501
UniProt: Q3IL99
Position
I:1502078..1502365
AA seq 95 aa
MTKSELIETLAQQHAHVPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHYRAPRT
GRNPKTGETVELDGKHVPHFKPGKELRDRVNESIA
NT seq 288 nt   +upstreamnt  +downstreamnt
atgactaagtcagaactgatagaaacacttgcacagcaacacgcacacgttccagtgaaa
gatgttgaaaatgcagtaaaagaaattcttgaacaaatggccggctcattatcttcttca
gatcgtattgagatcagaggttttggtagtttttctttgcattatcgcgctccacgtacc
ggtcgtaaccctaagactggcgaaacagtagagctagatggtaaacatgtaccacatttt
aaaccaggtaaagaattacgtgatcgtgtaaacgagagcattgcctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (40)   

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