KEGG   Phenylobacterium parvum: HYN04_12615
Entry
HYN04_12615       CDS       T05485                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
phb  Phenylobacterium parvum
Pathway
phb03030  DNA replication
phb03410  Base excision repair
phb03420  Nucleotide excision repair
phb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:phb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HYN04_12615
   03410 Base excision repair
    HYN04_12615
   03420 Nucleotide excision repair
    HYN04_12615
   03440 Homologous recombination
    HYN04_12615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:phb03032]
    HYN04_12615
   03400 DNA repair and recombination proteins [BR:phb03400]
    HYN04_12615
Enzymes [BR:phb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HYN04_12615
DNA replication proteins [BR:phb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HYN04_12615
DNA repair and recombination proteins [BR:phb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     HYN04_12615
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HYN04_12615
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc Taq-exonuc
Other DBs
NCBI-ProteinID: AWM78519
UniProt: A0A2Z3I0R3
Position
complement(2691407..2694196)
AA seq 929 aa
MACMSDAPLRLYLVDGSGFIFRAFHALPPLTRKSDGLPIGAVSGFCNMLWKLLVDMKAQP
DSPTHLAVVFDHSEKTFRNKIYPEYKAHRPPAPEDLVPQFPLVREATRAFGVHALEQPGF
EADDLIAAYARQVREAGGQVTIISSDKDLMQLVGDRVTMLDTMKNVRIGPDQVVEKFGVL
PDKVVEVQALCGDPVDNVPGAPGIGVKTAALLINEYGDLETLLARAGEIRQDKRRQILLE
FADQIRLSRQLVQLDDQAPLPSALEELAVADPDPDALAAFLQEMELNTLGRRVAGAHLAA
KAQAPADQTAAAEPVDVAAYACVRDLPTLDVWIARAQAAGVIAFDTETDALGSATAGLVG
VSLAVGPGEACYIPLAHEPEPGLALDAPGDLTQIPLATAIDRLRPLLEDPSILKVAQNAK
YDLGVLSRYGVQVSPVEDTMLISYVLEGGLHGHGMDELSRLHLGHSPIPFKQVAGTGKAQ
KSFRHVALEPATAYAAEDADVTLRLYRVLRPRLRKEGLLTVYETLERPMPPVLAAMENAG
VRVDPERLRRLSNDFSVRMGELEAEAHRLAGHPFNLGSPKQVGEVLYGQMGLQSRRTTAT
GAQGTDASVLEELAAEGHALPRVLLDWRQLSKLKGTYTDALAAAIAPATGRVHTSYALAS
TTTGRLSSTDPNLQNIPVRTEEGRKIRQAFVAEPGNVLISADYSQIELRLLAHVGDIPQL
KDAFARGLDIHAMTASEVFGVPIEGMPAEIRRRAKAINFGIVYGISAFGLAAQLSIPREE
AGDYIRTYFERFPGIRAYMDQAKETARRQGYVTTLFGRRVHIPAVQARSQAERAFGDRAA
INAPLQGASADIIRRAMIRMPGELAAAGLKTRMLLQVHDELIFEAPEAEAATASEVIRRV
MAAAPLPAVALSVPLVVDVRAAANWDDAH
NT seq 2790 nt   +upstreamnt  +downstreamnt
atggcgtgcatgagcgacgcccccctccgcctctacctcgttgacggctccggcttcatc
ttccgggccttccacgccctgccgcccctgacccgcaagtccgacggcctgccgatcggg
gcggtctccggcttctgcaacatgctgtggaagctgctggtggacatgaaggcccagccg
gactcgccgacccacctggcggtggtcttcgaccattccgagaagaccttccggaacaag
atctaccccgaatacaaggcgcaccggccgccggcccccgaggacctggtcccccagttc
cccctggtgcgcgaggcgacccgggccttcggcgtccacgccctggagcagccgggcttc
gaagctgacgacctgatcgccgcctatgcccgccaggtccgcgaggcgggcgggcaggtg
acgatcatctcctcggacaaggacctgatgcagctggtgggcgaccgggtcaccatgctc
gacaccatgaagaacgtccgcatcgggccggaccaggtggtcgagaagttcggcgtcctt
cccgacaaggtcgtggaggtccaggccctgtgcggcgatccggtggacaatgtccctggc
gcccccggcatcggggtgaagaccgccgccctgctgatcaacgagtacggcgacctggag
accctgctcgcccgggccggcgagatccgccaggacaagcgccggcagatcctgctggag
ttcgccgaccagatccgcctgtcccgccagctcgtccagctggacgaccaggcgcccctg
ccctcggccctcgaggaactggcggtggccgatcccgacccggacgccctcgccgccttc
ctccaggagatggagctcaacaccctgggccggcgtgtggccggggcgcacctggcggcc
aaggcccaggcgcccgccgaccagaccgccgccgccgagcctgtggacgtcgccgcctac
gcctgcgtccgggacctgccgaccctggacgtctggatcgcccgggcccaggcggccggg
gtgatcgccttcgacaccgagaccgacgccctgggctcggccacggcggggctggtgggg
gtctccctcgccgtcgggcccggcgaggcctgctacatcccgctggcgcatgagcccgag
ccgggcctggccctcgacgcccccggcgacctgacccagatccccctggcgacggccatc
gaccgcctccggcccctgctggaggacccctcgatcctcaaggtcgcgcagaacgccaag
tacgacctgggggtcctgtcccgctacggggttcaggtgtcgccggtcgaggacaccatg
ctgatcagctacgtcctggagggcggcctgcacgggcacggcatggacgagttgtcccgc
ctgcacctggggcacagccccatccccttcaagcaggtggccggaaccggcaaggcccag
aagagcttccgccacgtggccctggagccggcgaccgcctatgccgccgaggacgccgac
gtgaccctgcggctctaccgggtcctgcgtccgcgtcttcgcaaggagggcctgctgacc
gtctatgagacccttgagcgccccatgccgccggttctggcggccatggagaacgccggg
gtccgcgttgatcccgaacgcctgcgccggctgtccaacgacttctccgtgcgcatgggc
gagctggaggccgaggcccaccgcctggccggtcatcccttcaacctcggcagccccaag
caggtgggcgaggtcctgtacggccagatgggcctccagtcgcgccgcaccaccgccacg
ggcgcccagggcacggacgcctcggtgcttgaggagctggccgccgagggccacgccctg
ccgagggtgctgctcgactggcgccagctgtccaagctgaagggcacctacaccgacgcc
ctggcggcggccatcgcaccggcgaccgggcgggtgcatacctcctacgccctggcctcc
accaccacgggccggctctcttcaacggatcccaacctgcagaacatccctgtccggacc
gaggaggggcgcaagatccggcaggccttcgtcgccgagccgggcaatgtcctgatcagt
gcggactacagccagatcgagctgaggctgctggcccacgtgggcgacatcccccagctg
aaggacgccttcgccaggggcctggacatccacgccatgaccgcctcggaggtcttcggg
gttcccatcgagggcatgcccgccgagatccgccggcgggccaaggccatcaacttcggc
atcgtctacggcatctccgccttcggcctggccgcccagctctccatcccgagggaagag
gccggagactatatccgcacctatttcgagcgcttccccgggatccgggcctacatggac
caggccaaggagacggcgcggcggcagggttatgtgaccaccctcttcgggcgtcgcgtg
cacatccccgccgtccaggcccgcagccaggccgagcgcgcctttggcgaccgggcggcg
atcaacgcccccctccagggcgcctcggcggacatcatccgccgggccatgatccgcatg
ccgggcgaactcgccgcggccggcctcaagacccgcatgctgcttcaggtgcacgacgaa
cttatcttcgaggcgccggaagcggaggccgccacagcctcggaggtcatccgccgggtg
atggcggcggcgcccctgccggccgtggccctcagcgtgccgctggtggtcgacgtgcgc
gccgccgccaactgggacgacgcgcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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