KEGG   Pseudopodoces humilis (Tibetan ground-tit): 102106846
Entry
102106846         CDS       T02921                                 
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
  KO
K10754  replication factor C subunit 1
Organism
phi  Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03030  DNA replication
phi03410  Base excision repair
phi03420  Nucleotide excision repair
phi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:phi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102106846 (RFC1)
   03410 Base excision repair
    102106846 (RFC1)
   03420 Nucleotide excision repair
    102106846 (RFC1)
   03430 Mismatch repair
    102106846 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:phi03032]
    102106846 (RFC1)
   03400 DNA repair and recombination proteins [BR:phi03400]
    102106846 (RFC1)
DNA replication proteins [BR:phi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102106846 (RFC1)
DNA repair and recombination proteins [BR:phi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102106846 (RFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT AAA_22 AAA_14 Rad17 BRCT_2 AAA_30 AAA_5 AAA_17 RuvB_N RNA_helicase AAA_16 AAA_18 AAA_33 nSTAND3 AAA_7 TIP49 NTPase_1
Other DBs
NCBI-GeneID: 102106846
NCBI-ProteinID: XP_014117552
Position
Unknown
AA seq 1133 aa
MDIRKFFGVVPPAKRQECETVKKSEKIKNGEGPSNGKKREKETKVNNSPSEDDSKQKRMK
KKRRIIYDSDSEEEVQSVKKSKKSPEKKAATSKLGKVLKQDPVVYISETDEDDDFANKRI
SLKPKENGMSATGRPGTNTVKKEEVKPQAKSKPLSPVKQTPTSALDFFGTRSVQRSEKKL
VASKRKEPSQSSDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAMLDETPQKKKSR
KDTEGEQTVLSINSSPNTTAAGYKQSERVKATDSAGAAKNYSVKPQAKPEQLKGSHLSPQ
SSDGKKEVMAEKERGAQNSLSREKAASGKEEKTTPKKEKVSPKKTESVSPEDSEKKRNNY
QAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTG
NVSKKTNYLVVGRDCGQSKCEKASTLGTKVIDEDGLFDLIRTMPGKKSKYELAAETEAKK
GESKPKKTPQKAEAGKRNFSPFKREADNKKYKSTPEKGDTFRSVKKETTAVQKLTNFRHQ
TVEEKGAPKPMGNLVSEVNEDGAERLLWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNW
HKNTFEDGQAKPSKTGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDT
RSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAGNEDRGGIQELIGLI
RHTKIPIICMCNDRNHPKMRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQ
EIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFAAGEE
AARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAADSICDGDIV
DRQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKHDRIIQELAM
HMSLRTRTCKRTVNMEYLSYLRDALVQPLKDFGADGVQQAITFMDSYCLMKEDVENIMEI
SMWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLSSVKASKRQSGSAATLDLSEDLNV
EEIQSDEDEQDTVDSDAMIKQKKVKSSKLPKREKNEETTKKEGKRKQKTRHLE
NT seq 3402 nt   +upstreamnt  +downstreamnt
atggatatccggaagttctttggtgttgtacctcctgcaaagcgacaagaatgtgagact
gtgaaaaagagtgaaaaaattaaaaatggtgaaggaccctcaaatgggaagaaaagggaa
aaagagactaaggtgaataattcacccagtgaagatgattccaaacaaaagcggatgaaa
aagaagagaagaataatctatgattcagattcagaagaggaggtgcagtcagtgaaaaaa
tccaagaagtcacctgagaaaaaagcagctacttcaaaacttggtaaagttctaaagcag
gatcctgttgtttatatttcagagacagatgaggatgatgattttgccaataaaagaatt
tccctgaagccgaaggagaatgggatgtcagcgactggtcgtccaggaacaaatactgtg
aaaaaagaagaggtaaaaccacaagctaaaagcaaacccctgtctccagtgaaacagact
cccacctctgcacttgatttctttgggacaaggagtgttcaacgctcagaaaagaaactg
gtggcaagtaaaaggaaagagccttcacagagcagtgacagcacactagatgatgaggcc
attgctaggcaactgcagcttgaagaagactcagagctggagagacagctgcatgaagat
gaagaatttgctagaactctggccatgttggatgaaacaccacagaagaaaaagtctcgg
aaagatacagaaggagagcaaacagtactgagcatcaacagcagccctaatacaacagca
gccggatataagcagtcagaaagagtgaaagcaacagactcagctggtgcagccaagaat
tactctgtaaagccacaagctaaacctgaacagttgaaaggttctcatttatccccacaa
tcatctgatggtaaaaaagaagtgatggctgaaaaggaaagaggtgctcaaaattcacta
tcaagggaaaaagcagcttcggggaaagaagagaagacaacaccaaagaaggagaaagtt
tctcccaagaagactgagtctgtaagtcctgaggactctgaaaagaagcgaaacaactac
caagcgtaccgaagcttccttaatcgtgagggtccaaaagcactgggttctaaagagata
cctcagggagctgaaaactgcttggagggtctgacatttgtaattacgggtgttctggag
tgtattgagagagatgaggccaagtctctgattgaacgctatggaggaaaagtaactggc
aatgtcagcaagaagacaaattacctggtggtggggcgagactgcggccagtccaaatgt
gagaaggcatcaactttaggtacaaaagttattgatgaggatggtctgtttgatcttatt
cgaactatgccaggtaaaaagtccaaatatgagctggcagctgaaacagaggcaaagaaa
ggggagtcaaaacccaaaaagacaccacagaaagctgaagctggaaaaaggaattttagc
cccttcaaaagggaagctgataataaaaaatacaagtctactcctgaaaaaggagatacc
ttcagatctgtcaagaaagaaaccactgctgttcaaaaacttacgaactttagacatcag
actgtagaggagaaaggagcccccaaacctatgggaaacttggtttctgaggttaatgaa
gatggcgcagagagattgctgtgggtagataaatataagcctgtatctcttaaagcaatt
attggacagcagggtgagcaaagctgtgccaataaacttctccgatggctcagaaattgg
cacaagaacacctttgaagatggacaagcaaaacccagtaaaactggaagcaaagatgat
gggacaggctttaaagcagcattactttctggtccacctggagttggtaaaactactaca
gctgctttggtttgtaaggagctggggtatagctacgtggagctgaatgccagcgacact
cgcagcaagaacagtctaaaggaagtagttgctgaatcacttaacaacaccagcatcaaa
gacttctgttctggtacatcttcatcagttagtgggaaacatgtattgatcatggatgaa
gtggatggtatggcaggcaatgaagacagaggagggattcaggagttgataggtttgatc
cgacacacgaagataccaatcatttgtatgtgcaatgatcgcaaccatcctaaaatgcgc
tccttggtccactactgtttggatcttcgttttcaaagacctcgtctagaacagatcaaa
ggtgccatgatgtctattgcatttaaagaaggtttaaaaattcccccacctgctatgcaa
gagataatcctggcagcaaatcaggacatcagacaggttttacataatcttaatatgtgg
tgtgcaaaagacaaatcactgacttatgatgaggctaaaactgatgccagcagagccaaa
aaggacatcaaactgggtccttttgatgttgtccggaaggtttttgctgctggagaggag
gctgctcgtatgtctcttatagacaaatcagatcttttcttccatgattattcgctagca
cctctctttgtccaggagaattatgtgcatgtgaaaccagctgctgctggaggtaattta
aaaaagcacttggtgctcttgagtagagcagctgatagtatatgtgatggtgatatagtg
gacaggcagattcgtagcaagcagaattggaatcttcttccaacacaggctatttatgca
agtgttctcccaggggagctgatgaggggttacatgtcccagtttcctgtctttcccagc
tggctggggaaattttcatctacaggcaaacatgatcgtatcattcaagaactggcaatg
cacatgagtctcagaactcggacatgcaagaggacagtaaatatggaatatttgtcatat
ttgagagatgcacttgtccagcccttgaaagactttggagcagatggtgtacaacaagct
ataacatttatggattcttactgcttgatgaaagaagatgttgaaaatatcatggaaata
agcatgtggggaggcaaacccagtcctttttcaaagctggatcccaaggtcaaagcagct
tttactcgtgcctacaacaaagaggcacatctgactccgtattcacttagttctgtcaag
gcatctaaaaggcagtcaggatctgcagcgaccttagatctgagtgaagacttgaatgtg
gaagagatccaatctgatgaggatgagcaggatactgttgacagtgatgcaatgattaag
caaaaaaaggtgaagtcttccaagctgccaaaaagagagaaaaatgaagaaacaacaaaa
aaagaaggaaaaagaaaacagaaaactagacatttagaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (20)   
   Pfam (20)   
All databases (55)   

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