KEGG   Pelagibacterium halotolerans: KKY_1400
Entry
KKY_1400          CDS       T01645                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
phl  Pelagibacterium halotolerans
Pathway
phl02024  Quorum sensing
phl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KKY_1400
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    KKY_1400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phl03019]
    KKY_1400
   03036 Chromosome and associated proteins [BR:phl03036]
    KKY_1400
Messenger RNA biogenesis [BR:phl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     KKY_1400
Chromosome and associated proteins [BR:phl03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    KKY_1400
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AEQ51422
UniProt: G4R905
Position
1383082..1383327
AA seq 81 aa
MPSEKVQNLQDAFLNHVRKNKVPVTIFLVNGVKLQGVITWFDNFCLLLRRDAQSQLVYKH
AISTIMPGAPIQLFDPESNTD
NT seq 246 nt   +upstreamnt  +downstreamnt
atgcccagtgaaaaggtacagaaccttcaggatgcctttctcaatcacgtccgcaagaac
aaggttccggtgacgatctttctcgtcaacggcgtcaagcttcagggcgtcattacctgg
ttcgacaatttctgtctgctgctgcgtcgcgatgcccagagccaactggtctataagcac
gcaatttcgacgatcatgccgggcgcacccattcagctgttcgaccccgagagcaatacc
gattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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