KEGG   Phaeobacter porticola: PhaeoP97_01343
Entry
PhaeoP97_01343    CDS       T04595                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
php  Phaeobacter porticola
Pathway
php03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:php00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PhaeoP97_01343 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:php03019]
    PhaeoP97_01343 (rne)
   03009 Ribosome biogenesis [BR:php03009]
    PhaeoP97_01343 (rne)
Enzymes [BR:php01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     PhaeoP97_01343 (rne)
Messenger RNA biogenesis [BR:php03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PhaeoP97_01343 (rne)
Ribosome biogenesis [BR:php03009]
 Prokaryotic type
  rRNA processing factors
   PhaeoP97_01343 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: APG46766
UniProt: A0A1L3I3T4
Position
1357393..1360416
AA seq 1007 aa
MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEDAKPARRQSRSRRSRTK
AADVKSADVVETKDVSLEAAETGADIAGMETIDLTDDIDAGDTKPTETPDSASAGAPVAS
AEAEAPVVEEAVKDASDAPEMPAVDTIAETSEPQADAGAETQDDSAADAAEAEAATATEI
DAPEIEADDSVEEETAADATSKDESIESVADEDDSEDIRPVRKPRPRRYKIQEVIKVRQV
LLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKDIAVEL
DVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSI
RDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFARFQVESYLGGMF
NPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETATKTNLEAAEEVARQLRLRDL
AGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEA
TTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVSIANYLMNQKREHI
AQIETRYGLSVRIEGDPHLVSPDFSLEKFKTASRVVPVATAPVVSVDTSIMDQVDADEAN
DEIEEIEDDVAEVEAAEANAETGDDGEGDNKPKRKRRRRRRRKSSGGEGDDTNGEPQRDA
QGEANSDGQPAAEGGADTDTGENDAKADTADGKDASAEGEGAVKKRTRTRTRSRSRKKKT
DETVAAETQETAAAEAKTEEASAETMTSSDAPVADTAGAIAKTEVKADASTLNGAAPEAE
SAAVEAKTDETPVEVAKVAEIKADDATAQDVPAEQAEVQVEIQAETPAEPTPEPSSEQPE
TETSEAPVAEEPVAEVKQTPEPALAAAEVEPASPPKPKRRGWWSVGS
NT seq 3024 nt   +upstreamnt  +downstreamnt
atgcttattgacgccacccacgcggaagagacccgcgtcgtggtggtcgacggaaacaag
gttgaggagttcgactttgaatctgaaaacaaacgccagcttgctggaaatatctatctc
gcaaaagtaactcgcgtcgaaccgtcgctgcaggcggcttttgtggattatggcggaaac
cgtcatggttttctggcattttcggagattcatcccgactattatcagattcccgtcgct
gaccgtgaggcattgatggaggaagagcgcgcctatgccgaggctcagcgcgcccgagat
gacgaagaagatgcaaagcctgctcggcgtcagtcgcggtctcgccgtagccggaccaag
gctgcggatgttaaatccgcggatgtagtcgagaccaaggatgtcagccttgaggcggcc
gaaactggcgccgatatcgcgggtatggaaacgatcgacctgaccgatgatatcgacgca
ggcgataccaaaccgaccgagacgccagatagtgcgtctgccggcgcgcctgttgcgtct
gccgaagctgaggctccggttgtggaagaggctgtcaaagatgcctctgatgcgcctgag
atgccggcggttgatacgattgctgaaacatcggagcctcaggccgatgcgggtgctgaa
acacaagacgacagcgcagcagacgctgctgaggccgaagccgcaacggccactgagatc
gacgcacctgagattgaagcagatgacagcgtcgaagaagagaccgcagctgatgcgacg
tccaaggacgaaagcatcgaatctgttgcggatgaagatgacagcgaagacatccgcccg
gttcgtaaaccgcgcccacgtcgttacaaaattcaggaagtgatcaaggttcgtcaggtc
ctgcttgtgcaggtcgtgaaggaagagcgcggcaataaaggcgctgccctcacaacctat
ctgtctctggctggccggtattgcgtgctgatgcccaacaccgcacgtggtggtggcatt
tcccgcaaaatcaccaacgcagttgatcgcaagaaactcaaagatatcgcggttgagctg
gacgtgcccacgggcgcgggccttattgttcgtactgccggtgccaagcgcacaaaatcc
gagatcaagcgcgactatgaatatctgcaacgcctgtgggaacagatccgcgagctgacg
ctgaaatccatcgcgcccgccaaaatctacgaagaaggtgacctgatcaaacgttcgatc
cgcgatctttacagccgcgagattgacgaagttcttgtcgagggcgagcgcggctaccgc
atcgccaaggacttcatgaagatgatcatgccgtcccacgccaagaacgtgaagaattac
caggaccagctgccgctctttgcacggttccaggtggaaagctatctgggtggaatgttc
aacccgaccgttcagctgaaatcgggtggctatatcgtgatcggtgtgaccgaggcgctg
gtggcgattgatgtgaactctggccgggccaccaaggaaggctcaatcgaggaaaccgcg
actaagaccaatctggaggctgccgaagaggtggcccgccaactgcgtctgcgcgatctg
gctggtctgatcgtcatcgacttcatcgatatggacgagcgcaagaataatgccgccgtc
gaaaagcgcatgaaagacaagctaaagaccgaccgcgctcgcattcaagtgggtcgtatt
tcgggttttggtctgatggaaatgtcccgtcagcgtctgcgtccggggatgattgaggcg
acaaccgcgccgtgcccgcattgccatggcactggcctgatccgttcggatgactcgctg
gcgttgtcgatcctgcgccagatcgaggaggaaggcacacgccgtcgctcccgcgaggtc
ttggtgcgctgcccggtcagcatcgccaactatctgatgaatcagaaacgcgaacatatc
gctcagatcgaaacccgctacggtctctccgtgcggatcgaaggtgacccacatctggtc
agccctgatttctcgttggagaagttcaagaccgcgtcgcgtgtggtccctgtcgcaacc
gcccccgtggtttctgtcgacacctcgatcatggatcaggttgatgccgatgaggcgaat
gacgagatcgaagagatcgaggatgacgtggccgaggttgaggccgctgaggccaatgcc
gagactggtgatgacggcgagggagacaacaaacccaagcgcaagcgtcgtcgtcggcgg
cggcggaagtcctccggtggcgaaggtgacgacaccaatggggagccccaacgcgacgct
cagggagaggcaaacagtgacggccagcctgctgctgagggtggcgctgataccgacacg
ggtgaaaacgacgccaaggcagatacagccgacggcaaggacgcatccgctgagggtgaa
ggcgcggtgaagaaacgcacccggactcgcacccgctcgcgcagtcggaagaaaaagacg
gatgagaccgttgcagcagagacgcaggaaactgcggcggcagaggccaagaccgaagag
gcatcagccgagacaatgacatcgtctgatgcacccgtggcggacactgcgggcgcgata
gcgaaaaccgaggtcaaagctgacgcttcaaccctaaacggcgcggccccagaagcggaa
tctgcggcagtggaagctaagacagacgagacgccggtcgaagtggcaaaagtcgcagag
atcaaggccgatgatgccacagcgcaggatgtccctgcggaacaggcagaagtccaggtc
gagatccaagcggaaaccccggcagagccgacgcctgagccgtcttccgagcaaccagaa
acagaaacttccgaagcgccagtggcggaagaacctgttgctgaggtcaaacagacgcct
gaacctgcgcttgccgcagctgaggtcgaaccagcgagcccgcccaagccgaaacggcgc
ggctggtggtcagttggcagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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