KEGG   Phreatobacter cathodiphilus: C6569_09030
Entry
C6569_09030       CDS       T05356                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
phr  Phreatobacter cathodiphilus
Pathway
phr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C6569_09030 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phr03019]
    C6569_09030 (rnr)
   03016 Transfer RNA biogenesis [BR:phr03016]
    C6569_09030 (rnr)
Enzymes [BR:phr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     C6569_09030 (rnr)
Messenger RNA biogenesis [BR:phr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     C6569_09030 (rnr)
Transfer RNA biogenesis [BR:phr03016]
 Prokaryotic type
  tRNA degradation factors
   C6569_09030 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AVO45192
UniProt: A0A2S0NAL7
Position
1843282..1845609
AA seq 775 aa
MPRRSKTGLPSALPSREEVLAFIASQSGRVGKREITRHFGLHGADKAALKALLKDIVDEG
LVARGRGKLSKHGALPPVVVVDIHARDAEGDLVASPAEWDEEEHGAAPTIVIAVPHRPRP
GDPVPGVGDRALVRLSDGGAPSDDPRPVGRVMKVLERGRSRTIGVFRAVPGHGGRLLPID
KKNVGRELAIPEEATGDAKDGDLVAVDIVRTSRFGPPVAKVRERLGNLKSERAVSLIALE
VHGIPHVFRADTLAEAEKAEPVSVGRREDWRKLPLVTIDPPDAKDHDDAVHAEPDPSDDN
AGGFILTIAVADVAAYVRPGTALDREAAVRGNSVYFPDRVVPMLPERISNDLCSLKPHED
RPALACRVVIRADGRRKSHSFHRIMMRSAAKLAYAQAQAAVDGHPDETTDGLVEPILKPL
WEAYAALKRARDDREPLDLDLPERKIVLKPDGTVDRVVVPERLEAHRLIEEMMILANVCA
AETLEKHRTPCMYRIHDAPSMEKLLSLKEFLKTLDISLPKAALLRPSNFNQILARAKGTE
SAELVNQVVLRSQSQAQYDPENIGHFGLNLRRYAHFTSPIRRYADLIVHRGLIRALGFGQ
DGLTDGQAASLAEIAAEISAAERRAMAAERETIDRLIAAHLSERVGDVFGARISGMTRSG
LFVKLDDTGADGFVPASTIGGDYYRYEEGLQALVGTRTGETWRLGDTVTVRLVEAAPVAG
ALRFELMSDGRSGLAPAGRGAHIGRKKRDDGFSDGRRARPGDKPSRPPWKKKGRK
NT seq 2328 nt   +upstreamnt  +downstreamnt
ttgccccgcagatccaagaccggccttccatccgcccttccctcacgcgaggaggtcctg
gccttcatcgccagccaatccggccgggtgggcaagcgtgagatcacgcggcatttcggt
ctgcacggcgccgacaaggcggcgctgaaggcgctgctcaaggacatcgtcgacgagggc
ctggtcgccaggggccgcggcaagctgtcgaagcacggcgcgctgccgccggtggtggtc
gtcgacatccacgcgcgcgacgccgagggagacctcgtcgccagtcccgccgaatgggac
gaagaggagcacggcgccgcccccaccatcgtcatcgccgtaccgcatcgcccgcgcccc
ggcgatccggtcccgggcgtcggcgaccgggcgctggtgcgcctctccgacggcggagcg
cccagcgacgacccccgcccggtcggccgggtcatgaaggtgctggagcgtggccgctcg
cgcaccatcggcgtcttccgggccgtgcccgggcacggcggccggctcctgcccatcgac
aagaagaacgtcggccgcgaactcgccattcccgaggaagcgacgggcgacgcgaaggac
ggcgacctcgtcgcggtcgacattgtccgaacctcgcgcttcggcccgccggtggccaag
gtccgcgagcggctcggcaacctcaaatccgagcgcgccgtgtcgctcattgccctcgag
gtgcacggcatcccccacgtcttccgcgccgatacgctggcggaagccgagaaggccgag
ccggtctcggtcgggcggcgcgaggactggcgcaagctccccctcgtcaccatcgacccg
ccggacgccaaggaccacgacgacgccgtccacgccgagccggacccttccgatgacaat
gccggcggcttcatcctgaccatcgccgtcgccgacgtcgccgcctatgtgcggcctggc
acggcgctcgaccgcgaggcggcggtgcgcggcaattcggtttatttccccgaccgcgtc
gtgccgatgctgcccgagcgcatctccaacgacctgtgctcgctgaaaccgcacgaggac
cgccccgccctcgcctgccgcgtcgtcatccgcgcagacgggcgccggaagagccacagc
ttccaccgcatcatgatgcgctcggccgccaagctcgcctatgcccaggcccaggccgcc
gtcgacggccaccccgacgagacgacggacggtctcgtcgagcccatcctgaagccgctc
tgggaggcctatgcggcgctgaagcgggcgcgtgacgaccgcgaaccgctcgacctcgac
ctgcccgagcgcaagatcgtgctgaagcccgacggcaccgtcgaccgcgtggtcgtcccc
gagcggctggaggcgcaccggctgatcgaggagatgatgatcctcgccaacgtctgcgcc
gcggagacgctggagaagcaccgcacgccttgcatgtaccgcatccatgacgcgccgagc
atggagaagctcctctcgctcaaggagttcctgaagacgctcgacatctcgttgcccaag
gcggcgctgctgaggccctcgaacttcaaccagatcctggcgcgggcgaaaggcacggaa
tcggccgagctggtcaatcaggtggtgctgcgctcgcagtcgcaggcgcaatacgatccg
gagaacatcggccatttcggcctcaacctgcgccgctacgcacatttcacctcgccgatc
cgccgctacgccgacctcatcgtgcaccgcggcctgatccgcgccctcggcttcggccag
gacggcttgaccgacggccaggcggcctccctcgccgaaatcgccgcggagatttccgcc
gccgagcgccgcgccatggcggccgagcgcgagaccatcgaccggctgatcgccgcccat
ctctcagagcgtgtcggcgacgtcttcggcgcccgcatttccggcatgacccgatccggt
ctcttcgtgaagctcgatgacaccggtgccgacggcttcgtgcccgcctccaccatcggc
ggcgactattaccgctacgaggagggcctgcaggccctggtcggcacccgcacgggagag
acctggcgcctcggcgacacggtcacggtgcgcctcgtcgaggcggcgccggtggccgga
gccctgcgattcgaactgatgagcgatggtcgcagcggccttgcacccgcgggccgcggg
gcgcacataggccgcaagaagcgcgacgacggcttttccgacgggcggcgcgcaaggccg
ggcgacaagccctccaggccgccgtggaagaagaaaggccggaaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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