KEGG   Pangasianodon hypophthalmus (striped catfish): 113526754
Entry
113526754         CDS       T05759                                 
Symbol
polr2d
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03020  RNA polymerase
phyp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113526754 (polr2d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    113526754 (polr2d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phyp03021]
    113526754 (polr2d)
   03400 DNA repair and recombination proteins [BR:phyp03400]
    113526754 (polr2d)
Transcription machinery [BR:phyp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     113526754 (polr2d)
DNA repair and recombination proteins [BR:phyp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      113526754 (polr2d)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Rop
Other DBs
NCBI-GeneID: 113526754
NCBI-ProteinID: XP_026769875
Position
Unknown
AA seq 141 aa
MAAAGATNVGDIEEDASQLSFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVF
MKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR
FEDEELQQILDDIQTKRSFQY
NT seq 426 nt   +upstreamnt  +downstreamnt
atggcggctgcaggagcaacgaacgtgggcgatattgaagaagacgcctcgcagctgtct
ttccccaaagagtttgaaaatgctgagactctcctgaactctgaggtccacatgctcctg
gagcaccgcaaacagcagaacgagagcgctgaagatgaacaggagctctccgaggtcttc
atgaagacgctgaactacacggcccgcttcagccgcttcaagaaccgggagaccatcgcc
agcgtgcgcagtttactcttgcagaagaagctacataaattcgagctggcgagtttggcc
aatctgtgtcctgaagctgcagaagaagcgaaagcactcattcccagcttggaaggtcga
ttcgaggatgaagagctgcagcagattctggatgatattcagaccaaaagaagctttcag
tattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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