KEGG   Pangasianodon hypophthalmus (striped catfish): 113526797
Entry
113526797         CDS       T05759                                 
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113526797 (ddx6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phyp03019]
    113526797 (ddx6)
   03036 Chromosome and associated proteins [BR:phyp03036]
    113526797 (ddx6)
Messenger RNA biogenesis [BR:phyp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     113526797 (ddx6)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     113526797 (ddx6)
Chromosome and associated proteins [BR:phyp03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    113526797 (ddx6)
SSDB
Motif
Pfam: DEAD Helicase_C CMS1 AAA_22
Other DBs
NCBI-GeneID: 113526797
NCBI-ProteinID: XP_026769948
Position
Unknown
AA seq 486 aa
MSTARTENPVILGLTNQNGQKRGSAKPTGGPGGGGGGGGPQTTQPAQIKASSTVNNGNSL
PVPTANTVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWE
KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALVIVPTRELA
LQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRVLDLIKKGVAKV
GQVQMIVLDEADKLLSQDFVQMMEEILSFLPKQRQILLYSATFPLSVQKFMNAHLQKPYE
INLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQL
GYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGET
YLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSES
AEEVKL
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgagtacagccagaacagagaacccagttattctgggcttgacgaaccaaaatggccag
aagagaggctctgcgaagccgacggggggacctggtggtggtggtggtggcgggggacct
cagacaacacagcccgcccagattaaagcttccagcacagtcaacaatggcaactccctg
cctgtgcccacagcaaacacggtcatcaaacctggggatgactggaaaaagaatttaaag
cttcccccaaaggacatgcgcatgaaaacttctgatgtaactgctaccaaagggaatgaa
tttgaagattactgcctgaagcgggagttgttaatgggcatatttgaaatgggctgggaa
aaaccatcacctatccaggaggagagcattcccattgctttgtctggcagggacattctg
gctagagccaagaatggcacaggaaagagtggtgcctacctcattcccttacttgaacgt
attgatctgaagaaagactgcatacaagcactggtcattgtccccaccagggaactggct
ctgcaggtgagccagatctgcatccaggtcagcaaacacatgggtggggttaaggtcatg
gcaaccacaggtggaaccaacctccgtgatgatattatgcggcttgatgagaccgtgcac
gttgttatcgccactcctggaagagtgttggatctcatcaaaaaaggagtagccaaagtt
ggccaggtgcagatgatcgtgttggacgaagcagacaagctcctgtctcaggacttcgtg
cagatgatggaggaaattctgagcttcttgcccaagcaaaggcaaattctgctgtattct
gcaactttcccactaagtgtacaaaagttcatgaatgcccatctgcagaagccttatgag
ataaaccttatggaggagctgaccctgaagggtgtgacccaatattacgcatacgtgact
gaaaggcagaaagtccattgccttaatactcttttctctaggctccagatcaatcagtct
ataatcttctgcaactcgtcccagcgagtggaactcctggccaagaaaatctcccagctg
ggttattcctgtttctacattcatgccaagatgagacaggaacacaggaaccgtgtgttc
catgatttcagaaatggtttgtgccgaaatcttgtctgcacagatttgtttacgagaggg
attgacattcaggctgtgaatgtggtgatcaactttgattttcccaaacttggggagacg
tatcttcatcgtattggcagatctggtcgttttgggcacctgggtctggctattaacctg
atcacctatgatgaccgctttaacctgaaaggcattgaagagcagctgggcacagagatc
aagcccattcctagcagcatcgataagagcctgtatgtggcggagtatcacagtgagagc
gctgaggaggtcaaactgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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