KEGG   Pangasianodon hypophthalmus (striped catfish): 113534190
Entry
113534190         CDS       T05759                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113534190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phyp03019]
    113534190
   03036 Chromosome and associated proteins [BR:phyp03036]
    113534190
Enzymes [BR:phyp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     113534190
Messenger RNA biogenesis [BR:phyp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     113534190
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     113534190
Chromosome and associated proteins [BR:phyp03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    113534190
SSDB
Motif
Pfam: DEAD Helicase_C CMS1
Other DBs
NCBI-GeneID: 113534190
NCBI-ProteinID: XP_026782633
Position
Unknown
AA seq 478 aa
MATARTQILASVMGVTKQNGQPRPADLQSGSQPATVLSASQKGSSIPHTSGGIRFGDDWK
KSLQLPQKDMRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSG
RDILARAKNGTGKSGAYLIPLLERIDLKKGHIQAIVMVPTRELALQVSQICINMSRHMGG
VKVMATTGGTNLKDDIMRLDETVHVVIATPGRLLDLMKKGVAKADKVHMMVMDEADKLLS
QDFVILIEDIIGFLDKNRQILLYSATFPITVQKFMSKHLRKPYEINLMDELTLKGITQYY
AYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYR
NRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL
AINLITSDDRFNLKAIEDQLVTDIKPIPGSIDKSLYVAEFHSINHEEEEEKEAALSAS
NT seq 1437 nt   +upstreamnt  +downstreamnt
atggccactgcaagaacacagatcctcgcctcagtcatgggagtcaccaagcagaatggg
cagcccaggccagcagacctccagtcgggatcacaaccagcaacagtgctcagtgcctcc
cagaaaggaagcagcataccacacaccagtggtggtatcagatttggagatgactggaag
aagtccctgcagctaccacaaaaagatatgagagtgaaaacctcagatgtgaccgcaacc
aaggggaatgagtttgaagactattgccttaaacgtgaattgttaatgggcatcttcgaa
atgggttgggagaagccatctcctattcaggaggagagcattcccattgccctatcagga
agggacattctagctcgggccaaaaatggcacggggaagagcggagcctacctcatccct
ctcctggagaggattgacttaaaaaagggtcatattcaagccatagtaatggtgccaact
cgtgaattggctctgcaggtgagccaaatctgtatcaacatgagcaggcacatgggggga
gtgaaggtcatggccaccactggaggaaccaatctaaaggatgacatcatgcgcctggat
gagacggtgcatgtggtgatagccaccccaggtaggctgctggaccttatgaagaaaggt
gtggccaaagctgacaaagtccacatgatggtgatggatgaggcagacaagttgctctct
caagactttgtcatcctcattgaggatattattggatttttggacaagaatcgtcagatt
ctgctttattctgccaccttccccatcactgtacaaaaattcatgtcaaaacacctaaga
aagccctacgagattaacctgatggatgagctgactctgaagggcattactcagtactat
gcatatgtaacagagagacagaaagtacactgcctcaacactcttttctccaggctccag
atcaaccagtctataatcttctgtaactcaacccagagggtggaacttttggctaagaag
atcacacaactgggctactcttgtttttacatccatgcaaaaatgatgcaggaatacaga
aatcgtgtgttccatgacttcagaaatggtctgtgtagaaacctggtttgcacagatctt
ttcacaagaggaattgacattcaggctgtcaatgtggtcatcaactttgactttcccaaa
aatgcggagacctatctacaccgcatcggtagatcaggcaggtttgggcacctgggtctg
gccattaatctgatcacttcagatgatcgtttcaatctgaaggccattgaggaccagcta
gtgaccgacattaagcccattcctggtagcattgataagagcctgtatgtggcagagttc
cactccattaaccacgaggaagaggaagagaaagaggctgcactcagtgcatcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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