KEGG T05759: 113537646

Pangasianodon hypophthalmus (striped catfish): 113537646

Entry

113537646         CDS       T05759

Symbol

taf5

Name

(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1

K03130

transcription initiation factor TFIID subunit 5

Organism

phyp Pangasianodon hypophthalmus (striped catfish)

Pathway

phyp03022

Basal transcription factors

Brite

KEGG Orthology (KO) [BR:phyp00001]
09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    113537646 (taf5)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phyp03021]
    113537646 (taf5)
   03036 Chromosome and associated proteins [BR:phyp03036]
    113537646 (taf5)
Transcription machinery [BR:phyp03021]
Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     113537646 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     113537646 (taf5)
Chromosome and associated proteins [BR:phyp03036]
Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     113537646 (taf5)
    STAGA complex
     113537646 (taf5)
    TFTC complex
     113537646 (taf5)
    SAGA complex
     113537646 (taf5)
    SLIK complex
     113537646 (taf5)

SSDB

Motif

Pfam:

WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 Nup160 WD40_like PROPPIN RAB3GAP2_N

Other DBs

NCBI-GeneID:

113537646

NCBI-ProteinID:

XP_026788049

Position

Unknown

AA seq 733 aa
MAAVHDGPSDVESEKETKPDILSEESAANLPGITLSSSPLAPPSAVAPKAEEQQKTLLAV
LQFLKRNNLTESVDILRREARIQDELEEARGTDAAAPGLNSGSGDNSSLLSRVSSQSGAP
AKAGGEDQPDVSVVLSAYSQQGDPSLYQVYYSGLKKFIESVLDCHRAELSQLFYPLFVHM
YLELVYNNHENEAKAFFEKFSGDQECYYQDDLRVLSGLTKKEHMKGNETLLDFRTSRFVL
RISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSTSGSLAGEARREA
NKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGSKSKKQDPNAPQQNRI
PLPELKDSDKLDKIMYMKEATKRLRLGPEILPSICFYTFLNAYQGLTAVDITDDSSLIAG
GFADSTVRVWSVTPKKLRKVKSAADLSLIDKESDDVLERIMDEKTASESKILYGHSGPVY
AVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSAHGYYFVSGGHDR
VARLWATDHHQPLRIFAGHLSDVTCTCFHPNSNYMATGSADRTVRLWDVLNGNCVRIFTG
HKGPIHSLAFSPNGKYLASGSTDGRVLLWDIGHGLMIGELKGHSDTIYALKFSRDGEILA
SGSMDNTVRLWDAIKAVDDVETDDFTAATGHIHLPDNSQELLLGTYLTKSTAVIHVHFTR
RNLLLAAGAYISQ

NT seq 2202 nt +upstreamnt +downstreamnt
atggcggctgtgcatgatggaccgagcgacgtcgagagcgagaaagaaacaaaacccgac
attctgagcgaggagtcggcagcaaacctgcccggaataacgttgtcctcgtcgccgctc
gcacctccttctgccgtagcgcccaaagcagaggagcagcagaagactttactcgccgtg
ctgcagttcctgaagaggaacaacctaacggagtcggtggatatcctgcggcgcgaggca
agaatacaggacgagctagaggaggcgcgcgggacagacgctgcagcaccggggctgaat
tccggctccggagacaacagctcactcctcagccgtgtgtcttcccaaagcggcgctccg
gctaaagcaggtggagaggaccagccggatgtcagcgttgtcctctcggcgtacagccag
cagggggatccttcattgtatcaggtttactacagcgggctgaagaagttcatcgagtcg
gtactggactgccacagggccgagctgtcgcagctcttctacccgctctttgttcacatg
tacctggagctggtttacaacaaccatgaaaacgaagcaaaggcattctttgagaagttc
agcggtgaccaggaatgctactaccaggacgacctgcgtgtgctctcaggcctcaccaag
aaggagcacatgaagggtaacgagacgctgctggatttccgcacaagtcgcttcgtgctg
cgcatttcgcgcgactcctaccagctgctgaagcgccaccttcaggagcgccagaacaac
cagatctggaacatcatccaggagcacctctacatcgacatcttcgatggcatgccacgg
agcaagagtcagatcgacagcacgtccggcagcctggctggagaggcccgccgagaggcc
aacaaagccaaggtgttctacggattgctgaaggagcccgagatcgaggtccctctcgac
gatgaagatgaagaggctgagaacgaagagggcaaacccaagaagaagaaacccaagaag
gacagcatgggttcaaaaagcaagaagcaggaccccaatgcaccgcaacaaaacaggatt
cctctaccagaactaaaggactctgataaactggacaaaatcatgtatatgaaagaggcc
acgaagaggcttcgtctaggcccagaaatactgccctcgatatgcttctacacgttcctc
aacgcttaccagggtctgacagcagtggacattacagacgactcaagtctgatagcagga
ggcttcgccgactccacagtgcgtgtctggagcgtcacacccaagaaactccgcaaggtc
aaatccgcagcagatctcagtctcatagacaaggagtcagatgatgtgctggaaaggatc
atggacgagaaaacagccagcgagtccaagatcctgtacggccacagcgggccagtgtac
gccgtcagcttcagtccagacaggaattatctgttgtcgagttcagaagatggcaccatc
aggctgtggagcttgcagacatttacctgtctggtagcgtataagggacacaattaccca
gtgtgggacactcagttctctgcacatggatactattttgtgtctggaggacatgacaga
gtggcacggctgtgggccactgaccaccaccagccgctgcgcatattcgccggacatctc
tctgacgtcacctgcacctgcttccacccgaactccaactacatggccacaggctcagcc
gatcgcaccgtgcgcctctgggacgtcctgaacggcaactgcgtccgcatttttacagga
cacaagggaccaatccactctttggcattctcgcccaacggcaagtacctggcgtctggc
tcaaccgatggcagagttctgctgtgggacatcggccacggactcatgattggcgaactg
aagggtcacagcgacaccatctatgcactcaagttcagcagagatggagagatcctcgct
tcaggctccatggacaacacggtccggctgtgggacgccatcaaagccgtcgacgacgtg
gaaacggacgatttcacagcagccacgggtcacattcacttacccgacaactctcaggag
ttattactggggacgtacctgaccaaatccaccgccgtcatccacgtccacttcaccaga
cgcaacctgctactggccgccggtgcatacatctcccagtga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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