KEGG T05759: 113538333

Pangasianodon hypophthalmus (striped catfish): 113538333

Entry

113538333         CDS       T05759

Name

(RefSeq) collagen alpha-2(V) chain-like

K19721

collagen type V/XI/XXIV/XXVII, alpha

Organism

phyp Pangasianodon hypophthalmus (striped catfish)

Pathway

phyp04820

Cytoskeleton in muscle cells

Brite

KEGG Orthology (KO) [BR:phyp00001]
09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    113538333
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:phyp00536]
    113538333
Glycosaminoglycan binding proteins [BR:phyp00536]
Heparan sulfate / Heparin
  Extracellular matrix molecules
   113538333

SSDB

Motif

Pfam:

Collagen COLFI

Other DBs

NCBI-GeneID:

113538333

NCBI-ProteinID:

XP_026789108

Position

Unknown

AA seq 1394 aa
MALKGEKGEPGDIPHIVGLPGRPGAMGAPGPAGRAGYRGFKGRKGVAGPPGFDGIPGVPG
MPGKPGPEGQTALPGSQFASQMASGFHDAKMGMSALVSGSPGEAGPRGHPGPPGSPGPMG
AQGTPGDPGDPGPMGPHGPRGPDGPQGKPGQDGEPGEPGKKGDDGFPGSPGARGFPGLPG
QPGMKGHRGYAGPQGGKGERGVVGSKGASGIPGSMGTIGQQGPPGLPGERGRIGPTGSAG
KRGASGNPGKPGPLGTIGIPGAPGFPGSPGMKGEAGPTGPRGTSGAQGPRGDSGRVGFPG
PQGKQGPAGTDGAPGSKGPSGAPGVQGPVGLIGQPGPPGPQGKTGPAGAKGQVGEAGIPG
LKGEPGIKGEVGQPGAQGEMGPMGEEGKRGPRGDPGSVGPPGPPGETGAPGIRGFPGADG
LPGQKGAQGERGASGSSGSKGAGGDPGRPGEPGLPGARGLSGVAGPDGPEGKIGPQGAPG
DDGGPGPAGSNGGRGPPGTMGLPGPKGFSGDAGKAGEAGTPGAAGQRGRNGKDGEEGPAG
PAGPPGPAGKRGEQGPPGQTGFQGLPGTAGPPGEPGKPGDEGVTGEEGAAGQTGPRGERG
NPGERGQSGPNGLPGPKGSLGAPGSDGPKGSSGPAGKAGEPGPPGLQGMPGERGTPGAGG
PKGDRGSVGGKGDEGAAGNDGARGLPGPTGPTGTAGAPGEKGETGPRGPPGPPGSRAAPG
SPGPPGPPGPVGFAGAPGPDGQPGPKGESGEPGAKGEAGAPGPQGTAGKSGAQGASGVTG
LKGARGSQGSAGSSGFPGPAGGVGAPGAAGQTGEPGPQGSTGKKGEPGIRGEPGGPGRPG
ERGNAGPAGSPGDKGDSGEDGPPGPDGPPGPAGLSGQRGLVGLPGMRGERGLMGLPGPAG
PPGKPGTKGPQGVKGEMGPGGLPGPVGDRGDAGPQGSAGADGGPGTDGTRGVKGDRGEPG
AEGLAGPQGTPGTPGSVGAPGGPGLRGAKGASGPAGPAGQPGVRGKQGPQGPQGDKGEKG
ATGERGQKGHRGFAGLQGLPGTAGATGDAGERGIVGPSGQRGLPGPVGPAGKEGEMGAAG
PIGSPGSRGSPGDIGPEGPHGEPGPPGPPGPPGPPTALEDDFGKSPDYDGAYEAQAPPLP
EYNKDEAMPVNGSGVIQMDSSVHASLKALGSQLDSIKNADGSRHHPARTCQDIKQCYPMK
KSGEYWVDPNEGSLKDAIKVYCNMETGETCVSANPPSIPRKSWWSSLSSTPKPVWFGATM
NRGTKFTYGDKEDLPNTVAVQLRLLRLLSKEAVQTLTYHCKNSVAYRDDKSNNLKKAAVL
KAADGTDIKAYGHNRLKYTVTEDGCSKSSSEWSKTVFEYRTQKPSKLPIVDMAPVDVGGA
EQEFGIDIGPVCFS

NT seq 4185 nt +upstreamnt +downstreamnt
atggcactcaagggtgaaaaaggagaaccaggagatattcctcatattgtgggactgcct
ggtcgaccgggagcaatgggagctcctgggccagcgggacgtgcaggatatcgtggcttt
aaaggaagaaaaggtgtagcaggtccacctgggtttgatgggataccaggtgtgccaggt
atgcccggaaagcctggtcctgaaggacagactgcattaccagggagtcagtttgcatct
cagatggcttcaggcttccatgatgcaaaaatgggaatgtcagcacttgtctctggatct
cctggtgaagcaggaccaagaggacacccaggaccaccaggttcacctggccctatggga
gcacaaggcacccctggagatccgggtgatccaggacccatgggtcctcatggaccaagg
ggtccagacggtcctcagggaaaacctggtcaagatggtgaaccaggagaaccaggaaag
aaaggagacgatggattcccaggatcacctggggctcggggattcccaggcttaccaggt
caaccaggaatgaaaggtcacaggggatatgcaggtccacagggagggaagggcgagcgc
ggtgttgttggttcaaagggtgcatcaggcattcctggttcaatggggactatcggtcaa
cagggtccaccgggattgcctggagaaagaggtcggattggacccactggatctgcggga
aaacgtggagcgtcaggaaatcctggaaaaccaggtccattgggtaccataggaatccca
ggagctccaggttttccaggcagtccaggcatgaagggtgaggcaggacccacgggccct
cgaggcaccagtggagctcagggacccagaggggactcaggaagagtaggcttccctggc
cctcagggcaaacagggtccagcaggcacagacggtgctcctggatctaaagggccatcg
ggggcacccggtgtgcaaggtcctgtcggactgattggtcagcctggaccacctggacct
cagggaaagacaggacctgctggggccaaaggtcaagtgggtgaagctggcatccccgga
ctcaaaggagagcctggaattaaaggagaagtggggcaacctggagctcaaggagagatg
ggtccgatgggagaggaagggaaacggggccccagaggagatccaggatctgtggggcct
cccggtcctcctggagagacaggagctccaggtattcgtggttttccgggtgctgatggg
ttacctggacaaaagggtgctcaaggtgagcgtggcgcttcaggctcttccggaagtaaa
ggtgctggcggtgatcctggccgtcctggagaaccaggccttccgggtgcaaggggtctg
agtggtgttgctggacctgatggaccagaaggaaaaattggacctcagggagcaccagga
gatgatggtggtcctggacctgctggatcaaacggaggcagaggcccaccaggaactatg
ggtctgccaggcccgaaaggcttcagtggagatgcaggaaaagcaggagaagccggaaca
ccaggagcagcaggacaaagaggtcgcaatggaaaagatggagaggaaggacctgcaggc
cccgctggaccacctggtccagcaggaaaaagaggcgagcagggacctcctgggcagaca
ggctttcagggtttacctggaactgcaggtccacctggagagccaggaaaaccaggtgat
gagggagtcactggtgaagaaggtgctgctggtcagactggaccaagaggtgagcgtgga
aacccaggagagagaggacagtcaggacctaatggccttcctgggcctaaaggcagtctc
ggggcaccaggatctgatggacctaagggtagttcaggcccagcagggaaagccggagaa
ccaggcccacccggacttcagggaatgccgggagagagagggacgccaggcgccggtgga
cctaaaggagaccgtggttcggtaggtgggaaaggagatgagggagctgctggcaatgat
ggtgctcggggtcttcctggacccactggacctactggaacagctggagcacctggagaa
aagggagagaccggacccagaggacctcctggaccaccaggttctagagcggcgcctggg
tctcctggtccgcctggtcctcctggtccagttggatttgccggtgctcctggtcctgat
ggtcagcctggtcctaaaggagaatcaggagaaccaggtgcaaagggtgaggcaggggct
cccggtcctcagggaacggcaggaaaatctggagctcagggagcttctggtgttactgga
ctgaaaggcgccagggggagtcagggatctgctggttccagtggtttcccaggacctgca
ggaggcgtaggcgcaccaggagctgctggtcaaactggagagcctggtccacaagggtcc
acaggaaagaagggtgaacctggaatacgcggagaaccaggaggcccaggacgtccagga
gagcgtggaaacgcaggaccagctggaagccctggagataaaggcgattctggagaagat
ggaccaccgggccctgatggacctccaggacctgcgggattgtcagggcaaagagggctg
gtggggctacccggtatgagaggagagcgtggactgatgggtcttcctggacctgctggt
ccacctggaaaacctggcaccaaaggccctcagggagtaaaaggtgaaatgggtcctggt
ggattgcctggacctgttggggatagaggagatgctggcccacagggttctgcaggtgca
gatggaggtcctggaactgatggtactcgtggagtcaaaggagataggggagaaccaggt
gctgagggtctagctggaccccagggaaccccaggaacacccggatcagtaggagctcct
ggaggtcctggattgagaggggcaaaaggtgcaagtggtccagcgggtccagccggccag
ccaggagtcagaggaaaacagggacctcaagggccacaaggagacaaaggagagaaaggg
gctactggtgagaggggtcagaaaggtcaccgcggctttgctggacttcagggcctccca
ggaacagccggagcgacaggagacgcaggtgagagaggaatcgtcggaccgagtgggcaa
agaggacttcctgggcctgttggacctgctggtaaagaaggtgagatgggtgctgctgga
cccattgggtctcctggatctcgaggcagccctggagatatcggcccagagggcccacat
ggagaacctggccctccaggcccacccggtcctcctggacctcccactgctttggaggat
gactttggtaaaagcccagactacgatggcgcatatgaagctcaagctcctccccttcca
gagtacaacaaggatgaggcaatgcctgttaatggctctggtgtcattcagatggacagc
agcgtccacgcctcactgaaggctctgggcagtcagctggacagcatcaaaaacgccgac
gggagccgccatcacccggcacgtacctgccaggacatcaagcagtgctacccgatgaag
aaaagcggtgagtactgggtggaccctaacgagggaagtctgaaggacgcaatcaaggtg
tactgtaacatggagacgggggagacatgcgtgtctgcaaacccacccagcatccctcgc
aagagctggtggagttctctctccagtacgccgaaacctgtgtggtttggagccaccatg
aacagaggaacgaagtttacatacggagacaaagaggatttgcccaacacggtggctgtg
cagctgcggctcctgcgtctgctctctaaagaggcggtacagacgctcacttaccactgc
aagaacagcgtcgcttacagagacgacaagagcaacaacctgaagaaagctgctgtatta
aaggctgcggacgggacggatataaaggcgtacggccacaaccggctcaagtacacggtc
accgaggacggctgctcgaaatccagcagtgagtggagtaagacagtgtttgagtatcgc
acacagaagccctcgaagctcccgatcgtagacatggcgccggtggacgtgggcggagcc
gagcaggagtttggaatcgacatcggcccggtgtgcttctcgtga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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