KEGG   Pangasianodon hypophthalmus (striped catfish): 113540258
Entry
113540258         CDS       T05759                                 
Symbol
tnr
Name
(RefSeq) tenascin-R isoform X1
  KO
K06252  tenascin
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510  Focal adhesion
phyp04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    113540258 (tnr)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    113540258 (tnr)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:phyp00536]
    113540258 (tnr)
Glycosaminoglycan binding proteins [BR:phyp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   113540258 (tnr)
SSDB
Motif
Pfam: fn3 Fibrinogen_C Pur_ac_phosph_N EGF_2 EGF_Tenascin DUF4998
Other DBs
NCBI-GeneID: 113540258
NCBI-ProteinID: XP_026792441
Position
Unknown
AA seq 1345 aa
MMCWSIMALCSLMSLALLFLSINAVPAHKDKIVWTARIKRQATDGSGNTSNQSQPMIFNH
VYNINIPLESLCSVDLDSKGSTGSDKSGEEYEEQSVDLDSQVTFTHHINIPKAVCSCPAS
TMLQQLASRIEMLEKEVSLLRAQCSGACCGDNLVLGQLDFGPLCSGHGTFSMDVCGCVCD
EGWMGKNCSEPQCLGNCSGQGVCVEGECVCDSDFSGENCSEPRCPGDCSGQGVCIAGECV
CEEAYSGDDCSMNRCLNDCSEQGLCINGTCQCRLGFLGEDCSRISCANNCSHKGECKAGF
CVCQEGYMGEECASVAPPMNLRVRGVTERTIDIEWEGSSVVTDYLITYVPTSPGGVQLEL
RVQGSVTNTTISKLEPGLEYNINVYTVIEDVISVPVSATASTYLSNPDGLLFKSIMETSV
EVQWQPFDYLFDGWEISFIPMDNEGGMTTQLPSTITSYHQTGLRPGEEYTVNLVALKDQG
RSQPVTATVTTLIDGPTQLMIRDVSDTVAFVEWTLPRAKVDEIILRYGLVGYGGPKTTFH
LEPTLSQYSLQVLRPGSRYEVLVSSFHKGSESRIVSAEFITEIDPPKHLRVLSKTSTSLE
LEWDNSKAVVEYYCVVYSTLAGDQYNKIVIPHSNGTTTRITLTNLQPGTEYGIGISAILG
NNQSNPATMNARTGLDIPMDLMVTASTENSITLLWGSVQGPIEYYRVSYTSASGVTTEIT
IPRDISSTTLSGLEPGTEYTITVMAQRGRQQSAAATIDAFTGFRPVSQLYFSDITADSFA
IAWSAPAPPANNFKLQYSTDDSSEEFEVVLDGSKTRTVLSGLLPSRKYIVTLVTMHGDTA
SEPVTGTIVTGMDPPREIMVSFISEDSVTVSWAQPLAHFDYYKMSYQSARGQVDSVLIDK
DVTNYTLTRLHPATEYDIKLNTVRGSQESKVISTSVFTAMDMPMELMALNVTPQGALLRW
TPPLSNVDNYVLTLTRSQVTADTFLVEGNKQEHQLSQLLPSTPYSIGLYATKGPLTSGTV
ITSFITPMDAPQNLTASEVNHRSALISWQPPIADIDNYMLTYKSADGSRKELILDAEDTW
IRLEGLAETTEYTVRLQAARGLETSAIVSTSFTTGNRLFAVPQNCAQHLLNGELVSGVYT
VYINRDPSQGVQVYCDMTTDGGGWIVFQRRQNGLTDFSRTWSEYRTGFGNLEDEFWLGLE
NLHKITAQGRYELRIDMRNGQEAVYANYDRFSIGDSRSLYKLRIGEYNGTAGDSLSYHHG
RPFSTKDKDNDNAVTNCALSYKGAWWYKNCHRVNLNGKYGESRHSQGINWHMWKGHEFSI
PFVEMKMRPYNYRTISGKRRRCTPH
NT seq 4038 nt   +upstreamnt  +downstreamnt
atgatgtgttggtccataatggcattgtgttctctgatgagcttggcattgctgttcctc
agcattaatgctgtgccagcccacaaggacaaaatagtatggacagctaggatcaaacgg
caagctacagatggtagtggcaacaccagcaatcagagccagcccatgatcttcaaccat
gtgtacaacattaatattccactagagtccctgtgctcagtggatctggactcaaaggga
tccacagggagtgataaatcaggtgaggagtatgaggaacaatcagtggacttggacagc
caggtgactttcacccaccacatcaacatccccaaggcagtgtgttcatgcccagcttca
accatgctgcagcagctagccagtcgcatagagatgctggagaaagaagtatcactgctc
agagcacagtgtagcggtgcttgctgtggagataacttagtcctgggccagctggatttt
ggccctctctgcagtggccatggcaccttcagcatggatgtttgtggctgtgtgtgtgat
gaaggctggatggggaagaactgctcagaaccacaatgtctggggaactgctctggtcag
ggtgtgtgtgtcgaaggcgagtgtgtgtgtgacagtgatttcagtggagaaaactgctca
gagcctaggtgccctggtgactgctcaggccagggtgtgtgtattgctggagaatgtgtg
tgtgaggaggcctactctggagatgattgctccatgaacagatgcctgaatgactgctct
gagcaggggctctgcatcaatggaacttgccagtgcagactgggattcctaggtgaagat
tgctcacgtatctcctgcgctaacaactgcagccacaagggagaatgtaaggctggattc
tgtgtgtgccaggagggctacatgggagaagagtgtgcttcagtggcaccacctatgaat
ttgcgagtgcgtggagtgacggaacgtactattgacatagagtgggaggggtcatcagtt
gtaacagactacttgattacttacgttccaacaagccctggtggagtacagctggaattg
agagttcaagggagtgtgaccaacaccaccatcagtaagctggagccaggtctggagtac
aacatcaatgtgtacactgtcattgaagatgtcatcagtgtgccagtcagcgccacggcc
tcaacctatctctcaaatcctgatggtctactcttcaaatctatcatggaaacatcagtg
gaggttcagtggcaaccctttgactacttgtttgatggttgggaaataagcttcattccc
atggacaatgaaggaggaatgacaacccagctgcccagcacaatcacatcctaccatcag
actggtctaaggcctggagaggagtacactgtgaatctggtggcactaaaagaccaaggc
aggagccagcctgtcactgccactgttaccacattaattgatggaccaacacagcttatg
atccgggatgtctcggacacggtggcatttgtagaatggactctgcccagggccaaagtg
gacgaaatcatcctgcgttatggactcgtgggttatggtggacccaagaccacatttcat
ctggagccgactctgagtcagtactcactacaagtcctaaggccaggctccagatatgaa
gtgttggttagcagctttcacaagggcagtgaaagtagaattgtctctgctgagtttatc
acagagatcgatccacccaaacacttgcgggtgctctctaagacatccacatctctggag
ctggagtgggacaatagcaaggctgttgtggagtattattgtgttgtgtacagtacactg
gctggagatcagtacaataaaatcgtaattccacatagcaatggaaccacaaccaggatc
actctcacaaatctacaaccaggtactgaatatggcattgggatatcggctattctgggt
aacaaccaaagcaatccagccacaatgaatgccaggacaggtctggatatccccatggat
ctgatggtcacagcttccacagagaacagcatcactttactctggggctctgtccaggga
cccattgagtattacagagtaagctacacctcagctagtggtgtgaccactgaaataacc
atacccagagatatcagcagcaccacactgagtggcctggagcctggtactgagtacacc
atcactgtcatggctcagaggggcagacaacaaagtgctgctgccacaattgatgccttt
acaggcttccgtcctgtgagtcagctctacttctcagacatcacagctgactccttcgcc
atagcctggagtgctccagccccacctgctaataatttcaagctgcaatactctacagat
gattccagtgaggagtttgaagttgttctggatggttccaagacaaggactgtcctttca
ggcctcctgccttccagaaaatacattgttactctggttaccatgcatggagacacagct
tcagagccagttacaggcaccattgtcacaggtatggaccctcccagagagattatggta
tcattcatctctgaggattcagtaaccgtatcatgggctcagccgcttgctcactttgat
tactacaaaatgtcctaccagtctgctagaggtcaagtggacagtgtgttgattgacaag
gatgtgacaaactatactctgaccagactccatcccgcgacagaatatgacatcaaatta
aacactgtgcgtggaagccaggagagcaaggtcatcagcaccagtgtctttacagccatg
gacatgccaatggaactgatggccctgaatgtcacaccacagggagcattgttgcgctgg
actcctccactctctaacgtggataactatgtactcactctcacccgtagccaagtgaca
gcagacacatttctagtggaagggaacaagcaggaacatcagctgagtcaacttctcccc
agcactccttattccattggtctctatgccaccaagggccctttgaccagtggcactgtg
atcaccagcttcatcacacccatggacgctccccagaatctgactgctagtgaggtcaac
caccgtagtgccctcatctcatggcaaccgcccattgcagacatcgacaactacatgctg
acctataagtcagctgatggaagccgcaaagagctaattctggatgctgaggacacatgg
atccgtctggagggactggctgagacaacagagtacacagtgagattgcaggcagcccga
ggccttgagaccagcgccattgtctctacatccttcacaactggaaaccggttgtttgct
gtgccgcagaactgcgctcagcatctgctaaatggtgagctcgtcagtggagtttacact
gtctacatcaaccgtgaccccagtcagggtgtacaggtctattgcgacatgactactgat
ggtggtggctggattgtgtttcagcgtcgccagaatggcctgactgatttctccaggaca
tggagtgaatataggactggatttgggaatctggaggatgagttctggctaggtttggag
aatcttcacaagattacggctcaaggacgctatgagctgcgcattgacatgagaaatggc
caggaggcagtatacgccaactacgaccggttctctattggagactccagaagcctctac
aaactaaggataggggaatacaatggcactgctggtgactctctgagctaccaccatggt
cgacctttctccactaaagacaaggataatgacaacgctgtaactaactgtgcactttcc
tataaaggagcctggtggtataagaattgtcacagagtcaacctaaatggcaaatatgga
gagtccagacacagtcagggtatcaactggcacatgtggaaaggccatgagttctccatc
ccgtttgtggagatgaagatgagaccttataattatcgcaccatcagtggcaagcgaagg
aggtgcactccacattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (6)   
   Pfam (6)   
All databases (29)   

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