KEGG   Pangasianodon hypophthalmus (striped catfish): 113543718
Entry
113543718         CDS       T05759                                 
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082  ATP-dependent chromatin remodeling
phyp03083  Polycomb repressive complex
phyp04110  Cell cycle
phyp04330  Notch signaling pathway
phyp04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    113543718 (hdac1)
   03083 Polycomb repressive complex
    113543718 (hdac1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    113543718 (hdac1)
   04350 TGF-beta signaling pathway
    113543718 (hdac1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    113543718 (hdac1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:phyp03036]
    113543718 (hdac1)
Enzymes [BR:phyp01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     113543718 (hdac1)
Chromosome and associated proteins [BR:phyp03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     113543718 (hdac1)
   HDAC complexes
    Sin3A-HDAC complex
     113543718 (hdac1)
    BRAF-HDAC complex
     113543718 (hdac1)
    REST complex
     113543718 (hdac1)
    SHIP complex
     113543718 (hdac1)
    MiDAC complex
     113543718 (hdac1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     113543718 (hdac1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    113543718 (hdac1)
  Chromatin remodeling factors
   NuRD complex
    113543718 (hdac1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 113543718
NCBI-ProteinID: XP_026797918
Position
Unknown
AA seq 480 aa
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPDKRIPIRAHDKRIACDEEF
SDSEDEGQGGRRNAANYKKTKRVKTEEEKDGEEKKDVKEEEKTPEEKMDTKGPKEELKTT
NT seq 1443 nt   +upstreamnt  +downstreamnt
atggcgctgacttcccaaggaacaaagaagaaagtttgctattattatgacggtgatgtt
gggaattattactatggccagggtcatcccatgaagcctcaccgcatccgcatgacccac
aacctcctcctcaactatggcctctataggaagatggagatctatagaccacacaaagcc
aacgctgaagagatgaccaaatatcacagtgacgactacatcaagttcctgcgctccatc
cgcccagacaacatgtccgagtacagcaagcagatgcagagatttaatgtgggtgaagat
tgccccgtgttcgacggcctgtttgagttctgtcagctttcaacgggcggctctgtcgcg
ggtgccgtgaaactaaacaagcagcagacagacatcgccattaactgggcaggcggcctt
catcatgccaagaagtcggaggcgtctggtttctgctacgtcaacgacattgtgctggcc
atcctggaactgctcaagtaccatcaaagagttctgtatattgatatcgacatccaccac
ggtgatggagtagaggaggccttctacaccacagatcgtgtcatgaccgtgtctttccat
aagtatggagagtactttcctggcacaggtgacctcagagacattggtgctggaaagggc
aaatactacgctgtgaactacccactcagggatgggattgatgacgagtcttatgaagcc
atattcaaacccatcatggccaaagtgatggagatgtaccagccgagtgctgtagtgctt
cagtgtggtgctgactctctgtcgggggacaggctgggctgcttcaacctcaccatcaaa
ggtcacgctaaatgtgtcgagtacatgaagagttttaacctgcccttgctcatgctgggt
ggaggtggctacaccatcaggaacgtggcccgctgctggacctatgagacagccgtcgcc
ctggacagcactattcctaatgagcttccatacaatgactactttgagtatttcggacct
gacttcaagctccacatcagtccctccaacatgaccaaccagaacacaaacgactaccta
gaaaagatcaagcagcgtctgtttgagaacctgcgcatgctgccccacgctcccggagtg
cagatgcaggcgatcccagaggacgccgtgcaggaggacagcggggacgaggaggatgac
ccagacaaacgtatccccatccgtgcccacgacaagcggatagcctgcgatgaagagttc
tccgattctgaggatgaaggacaaggcggccgcagaaatgcagccaactacaagaagacc
aagcgagtgaagactgaggaggagaaagacggagaagagaagaaagatgtgaaagaggag
gagaaaaccccagaagagaaaatggacacaaaagggccaaaagaagagctgaaaacaacc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system