KEGG   Pangasianodon hypophthalmus (striped catfish): 113545648
Entry
113545648         CDS       T05759                                 
Symbol
ddx43
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43 isoform X1
  KO
K17043  ATP-dependent RNA helicase DDX43 [EC:5.6.2.7]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:phyp03041]
    113545648 (ddx43)
Enzymes [BR:phyp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     113545648 (ddx43)
Spliceosome [BR:phyp03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    113545648 (ddx43)
SSDB
Motif
Pfam: DEAD Helicase_C KH_1 MOEP19 ResIII KH_2 SNF2-rel_dom CMS1
Other DBs
NCBI-GeneID: 113545648
NCBI-ProteinID: XP_026800881
Position
Unknown
AA seq 683 aa
MSDWEAEYDENGGAISKPSRVRTAPCTQWKATSNTSKENVSFGGKRGGKVDREGPQWRNW
RERDGEVNFTERRDSHNGRETRRDRAASTRPLTLTVENSLVGRIIGRGGAKIRELEESSG
ARIKINRGDYEGEVLIFGSSDVQQKANDLIKELIGTGNANGPGLHYGSENSGLRSDSCWS
ASSLQASAACTSTPIDWNAIRANREKYETLKWQDLPPMKKNFYIEADSVAKRSAEEIRDW
RKENNNIFVDDLKEEGKRAIPNPVYTFEEAFACYPGIMENIVRVGFQKPTPIQCQAWPIV
LSGLDLIGIAQTGTGKTLSYLLPGFIHMDQQPLPRDKRSGPGMLVLTPTRELALQIEAEC
NKYSYKGFKSICVYGGGDRRAQIKTVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLD
EADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPTGVRRLAKSYLKDPMMVYVGSLDLA
AVDTVQQTVLVVQEEEKKAYIFDFIHNMEPEDKVLIFVGKKIVADDLSSDLCLQGIAVQS
LHGDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDISHVFNFDFPRNIEEYVHRVG
RTGRAGRSGVSVTLVTRGDWKMAGELIHILERAGQEVPEDLVLMAERYDKHQKEKEMFPA
KTRGGRAQRGARDGFREGSNRCF
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgtcggattgggaggctgaatacgacgagaatggtggcgccatctcaaagccttcgcgt
gttcgtacagctccgtgtacacagtggaaagccacctcaaataccagtaaagaaaatgtt
tcttttggtgggaagcgtggcgggaaagtggaccgtgaaggtccccaatggcggaactgg
agagagcgtgacggagaagtgaacttcaccgagcgccgagactcccacaacggcagagaa
acgcgccgtgacagagcggcttcaacccgacctctcaccctgaccgtggaaaactcttta
gtcgggagaattataggtcgaggcggagcgaaaatccgcgaactggaggagtctagtgga
gcgagaattaagattaaccgtggagattatgagggagaggtgctgatctttggtagcagt
gatgtccagcagaaagccaacgatctgatcaaggagctgataggaacgggtaacgccaat
gggcctggacttcactatggtagtgagaattcaggcttgaggagtgactcctgctggtca
gcatcttcactgcaggcttcagctgcttgcacttctacacctatagattggaatgccata
agagccaacagggagaaatatgagactttgaagtggcaagatcttccacctatgaagaag
aacttttacattgaggcagactctgtggccaagcgcagtgcagaggagatcagagactgg
agaaaggagaacaacaatatctttgtggatgatctgaaagaagaagggaaaagagcaatc
cctaatcctgtgtacacttttgaggaggcttttgcttgctatcctggaataatggaaaac
atagtcagagtggggtttcaaaagccaactcccattcagtgtcaggcttggcctatagtt
ctgagtggcctggatttgattggcattgcgcaaactggcactgggaagactctctcctat
cttcttcctggattcattcacatggaccagcagcctctgcccagagacaagagaagtggc
cctggaatgctggttttgactcctactcgtgagttggcactccagatagaagcagagtgt
aacaagtacagttacaaaggctttaaaagtatctgtgtttatggaggaggtgacagacga
gcccaaataaagacagttaccagtggtgttgatatagtgatcgccacaccaggacgactg
aatgatttgcaaatgaacgagctaataaacctacgttccattacctacttggtattggat
gaggcagatcgaatgttggacatgggctttgagcctcaaatcatgaaaatcatcctggac
attcggcctgaccgacaaacagtcatgaccagtgccacttggccaacaggcgtgagacgt
ttggccaagtcctacttgaaagaccccatgatggtgtatgtgggctctctagacctagca
gctgtggacacggtgcagcagacagttttggttgtacaagaggaggagaagaaggcatac
atctttgactttatccacaatatggagcctgaggataaagtgttgatatttgttggaaaa
aagattgttgcagacgacttgtccagtgatctgtgtctccaggggatagcagttcaatcc
ctgcatggagacagagagcagtgtgaccgtgaagaagccctacaggactttaaagatgga
cgtgtgcgtattctggtggccactgatctagcctctaggggacttgatgtccatgatatc
tcgcatgtcttcaactttgacttcccccggaacattgaggagtatgttcacagagttggg
cgaaccggccgtgcagggcggtctggggtttctgtaaccctggtcacgagaggagattgg
aagatggcaggtgaacttatacacattttggaaagagctggacaggaggtaccagaggac
ctggtactgatggcagagcgctatgataaacaccagaaggagaaagagatgtttcctgct
aaaaccagaggaggacgggctcaaagaggagcaagagatgggttcagagaaggctcaaat
aggtgcttctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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