KEGG   Paenibacillus ihbetae: BBD41_19405
Entry
BBD41_19405       CDS       T05154                                 
Name
(GenBank) DNA polymerase domain-containing protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pib  Paenibacillus ihbetae
Pathway
pib03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pib00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BBD41_19405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pib03400]
    BBD41_19405
Enzymes [BR:pib01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BBD41_19405
DNA repair and recombination proteins [BR:pib03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BBD41_19405
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: ANY74562
UniProt: A0A1B2E3S9
Position
complement(4383064..4383981)
AA seq 305 aa
MARTVKGTLTIEGQEIQITNPDKPLWPEVGITKAIYLQKLAAISPYLLRYCKGRLLTTIR
YPHGVDGESFYQKNAPEPLPPFVSTYVHEGINYVMLNGLPELLWLGNLAALEFHPSLHLA
GDVLPCEWMIDLDPSLPEEPRIMEATAIVGNVLHSLGIASVPKTSGATGVQIIVPIPEGI
TFDELRSVGQFVGQYVTEKHPELFTIERLKKNRGDKIYFDYLQHYSGRTLAAPYTPRARR
LATVSTPLTWEEVQRDVSPSDFHLLNIEQRLKEKGDLLQALPPQPIGDIIRHLNAKGKPA
SKRKG
NT seq 918 nt   +upstreamnt  +downstreamnt
atggcccgtaccgtcaaaggaacgctgaccattgaaggtcaagagattcagattaccaat
ccggacaagccgctgtggcccgaggtcggcattaccaaagccatctatctgcagaagctc
gcggcgatctctccctacctgctccgctattgcaaaggcaggctgctgacaaccatccgt
tatccgcacggcgtggacggggaatcgttttatcaaaaaaatgcgcccgagccgctcccg
ccctttgttagcacctatgtgcacgagggcatcaactatgtcatgctgaacgggctgccc
gagctgttatggctgggcaacctcgcagccttggaattccacccttcgctccacctggcc
ggtgacgttctgccatgcgagtggatgatcgacctggacccgtcgctccccgaggagcca
aggatcatggaagccaccgctatcgtcggcaatgtgctgcactcgcttggaatcgcctcc
gttccgaaaacgtcgggggcaaccggggtgcagatcatcgtcccgattcccgaaggcatt
acgttcgatgagctgcgctccgtcggccaattcgtaggtcaatacgtaacggagaaacac
cccgaattgttcaccatcgagcggctaaagaaaaatcgcggcgacaaaatctatttcgat
tatctccagcattacagcggaagaacgcttgccgcaccatatacccccagggcaagacgc
ttggcgacggtatcgacgccgctcacctgggaagaggttcagcgggatgtctccccgtcg
gatttccacctgctgaacatcgagcagcgtcttaaagagaagggcgacctgcttcaggcc
ctgcctccgcagccgatcggagacatcatccggcatctgaatgccaaggggaagccggca
tcaaaacggaaaggatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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