KEGG   Scheffersomyces stipitis: PICST_32908
Entry
PICST_32908       CDS       T01023                                 
Symbol
UFD4
Name
(RefSeq) ubiquitin--protein ligase
  KO
K10590  E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26]
Organism
pic  Scheffersomyces stipitis
Pathway
pic04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    PICST_32908 (UFD4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pic04121]
    PICST_32908 (UFD4)
Enzymes [BR:pic01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.26  HECT-type E3 ubiquitin transferase
     PICST_32908 (UFD4)
Ubiquitin system [BR:pic04121]
 Ubiquitin ligases (E3)
  HECT type E3
   PICST_32908 (UFD4)
SSDB
Motif
Pfam: HECT
Other DBs
NCBI-GeneID: 4840071
NCBI-ProteinID: XP_001385872
JGI: 32908
UniProt: A3LXR1
Position
6:complement(931859..936967)
AA seq 1702 aa
MANTKPSQIGAEDSGNQRENSPDVAYHSANEEQDDNGIDDDEDDSLQRLSEQAQRRRSSQ
RGFHDEHVRDTYEDTDEHDDDDAEGVSGGNDDMSDVDAMEPGDFLRRLIQPRLSRSASSR
NEQDHSSTGSAGDEDEAMDEDDPRAEFLRAIGSLSSSGSGSHLSSGSGQVFVDVVQRLMG
GGIMFGGGMNRESSEIDGLINNLNQREDSYIILETLNELSERLLMMNGITAERLIPANKL
AKSLVNIMEDTNLSEELEIQLVTCRCLYNFLEVNQDFVHDALNNHAIEALCTKLMEVSYI
DLTEQALQTLEMISRDPISHNSIIANNGLRACLQYMDFLTIHAQRKCLSVVSNSCTNITV
ANFQKVKDIMDNISEVVRSHTDSVVVENAWLTISRIIISFKTKPELLEELFSNKELLLKD
FTQVIYISCNKSSNTSSENDSSKVALNYSSCLSLIKSLIILSSTGVEISRILLSECSIGE
VIVKSLNKYSKFKSNTSQSENANLDQSFIKTTNESISIEALMAAPKELLSQFLNLIGYLL
PISYSPSETPFLRNNHDDFEEKQKLNKSRVELCKDIIPRQYCDFVNDIWHLLMCSFQATM
DYEIRRKVFIDIFRIVSFSSESNLSKIKDVNLITNILASVANQSKASIGRNFSNTARLAK
LFSKEEDLDMLSSDDETFEGNLDEHDAIVNEDEEEIAGIEEEIDEGLLQEDADNIEEEDS
FDDNDNEDEEDHDENDDREDDEDEDEYEEVGGLPYPQTENSADDISKLNSNVLLLSGLLI
ARLLIEKAPQTFLPDFEREGLISDVLSIVKSLTGNVEEEEATGSSTRVHSISASYSNKYI
DTEFTKEYEYKLTNSSILYKIYNVCSIIEKSYLKLKFSGNSSIPEHMQILNEIDSKLRDH
KYLKTLSFDEWKLIWDKLEFALNGASSNIQISSFELISSGIIESLSQVFNSESYDFGFEF
SDCYKAFISVFFVDKARGSSSFLASLQEALTRTESFQIISSGSSSIVSLGSFFQNDNSQT
AIMAKQIKLKLVASENETDSKLPSNMENMILSVHAIATFKSVDTYLKQRFKFIEELSGRR
DRSNGDLGNDDEDVSKRNPFNIEFLINGESVPNEITIYGAIYRSLQNKPDEIVDPSRIWS
TVHNISYRRISSAVTKESKLMNYSFHIKDNELDIYDKTTIYILKLLKVLFEMNAFVKINI
PNTVAIPASNFMNWKLTVKLNRQLEEPLVVASGTLPGWSIHVTKQFPFIFPLETRIFFLQ
STSFGYSRLIHQWQIRTNQGNDENNTNNNNNQRAQLGRPTRHKVRISRKFILQSAIKVLG
LYGSTPRILEIEYFDEVGSGLGPTLEFYATVSKEFSKKKLKLWRDNDPSEVDDEAYVSNA
LGLFPSPLDKHQISTENGRKVLSFFSSLGKFVARALLDSRIVDFNFNPVFLKLVQYFNLH
GVQRINHRNLKKMTNISSLRMVDPALADSVEHLLKYVKQFPQVGEIERDSIVIDGSTIKD
LSLYFELPGYPEFELIAGGSEIQVTATNLELYINRILESTLFTGIVHQAKSFMDGFSNVF
PVNTLIIFSSEELAGLFGGAEEDWSIDTITSAVYANHGFTKESDAIKSLITILVQFNEEE
RRAFLQFLTGAPKLPIGGFKALRPELTVVRKHAEEGLKDDDYLPSVMTCANYLKLPNYSS
EDLMRKRLLQAINEGAGAFLLS
NT seq 5109 nt   +upstreamnt  +downstreamnt
atggctaataccaaacccagccagatcggtgccgaggattctggcaaccaaagggagaat
tcgccagacgtcgcctaccattctgccaacgaagaacaagatgataatggcatcgatgat
gatgaagatgactctttacagagactttcggaacaagcccaaaggcgaagactgagccaa
agaggcttccacgatgaacacgttagagatacttacgaagatactgacgaacacgatgat
gacgacgctgaaggcgtcagtggtggtaatgacgacatgagcgacgtagatgcaatggaa
cccggtgacttcttgagaagactaattcaaccaaggttgagtaggagtgccagttcgaga
aatgaacaagatcacagcagtaccggaagcgctggagacgaggacgaagcaatggatgaa
gatgatcctcgagccgagtttttgcgtgccattggatctttatcttcgtcagggagtggt
tcacatttgtcttctggtagcggccaggtttttgttgacgtagtgcaaaggctaatgggc
ggtggaataatgtttggaggaggaatgaatagggaaagtagtgaaattgatggattgatc
aacaacttgaaccaaagagaagattcgtacataattcttgaaactttaaacgagctatca
gagagattacttatgatgaatggtatcacagcagaacgccttattcctgctaacaagttg
gccaagagcttggtaaatataatggaagatacaaatttgtcggaagagctagagatacaa
cttgttacttgtcgttgtctctataattttctagaggtcaatcaggattttgtccatgat
gccctcaacaaccatgcaattgaagctttgtgcaccaagctcatggaggtaagctatatt
gacttaacagaacaagctttgcaaacactagagatgatttctcgtgatcccatttctcac
aacagtattattgccaacaatggtctaagagcatgcctacaatacatggattttttgacc
attcatgcccaaaggaagtgcttgtcagttgtatccaattcttgtacaaatattacagtt
gcaaacttccagaaggtaaaggacatcatggataatatctctgaagttgtcagaagtcac
actgattccgtggttgtggagaatgcatggctaaccatttctcgaatcattatcagcttc
aagaccaagcccgagttgttagaggaattatttctgaacaaagaattattgttgaaagat
ttcacacaggttatttacatcagttgcaacaagtcactgaatacatcatctgaaaatgat
tcgtccaaagttgcattaaattacagttcgtgcttaagtttaatcaaatctttgataatc
ttgagtagcaccggtgttgaaatctctagaatcttgttgagcgaatgctcgataggggag
gttatcgtcaaatctcttaacaaatactctaagtttaaatctaatacgtctcaatctgag
aatgcaaatttggaccaatcatttataaagactaccaatgaatcaatatcaatcgaagct
ttaatggctgctcccaaagagctcctttcgcagtttctcaatttgatcggctatttattg
ccaatcagctattcccctagcgaaaccccattcttgcgaaataaccatgacgacttcgaa
gaaaagcagaaattgaataagtctagagttgaactatgtaaggatatcattccaagacaa
tactgcgattttgttaatgacatttggcatttactcatgtgtagtttccaagctacaatg
gattatgaaattcgcagaaaagttttcattgatatttttagaattgtcagcttcagttca
gaatccaacttaagcaaaataaaagatgtcaacttgatcacaaatatattggcatcggtt
gccaaccaaagtaaagcactgattggacgcaacttctccaatacggcacgcttagcaaaa
ttgttttctaaggaggaggatctagacatgttaagcagcgacgacgagacatttgaagga
aatttggatgagcatgatgcaattgtgaacgaagatgaagaggaaattgcaggaattgaa
gaagaaatcgacgaagggttgttgcaagaagacgcggataatattgaagaagaagattct
tttgatgacaacgacaatgaggacgaagaagatcacgatgaaaatgatgatcgtgaagat
gatgaggatgaagacgaatacgaagaagtcggcggattaccatatcctcaaactgagaat
tcagcggatgatatatcaaaattgaattcaaacgttctactacttagtggattgcttatt
gcaaggcttcttattgaaaaagcacctcaaacattccttcctgatttcgaaagggagggc
ttaattagtgatgttttactgattgtcaaaagtttgacgggtaatgtcgaagaagaagag
gcaacaggaagcagtacaagagttcattccatttctgcaagctacagcaacaaatacatt
gatacagaattcacaaaagagtacgaatataaattgacaaatagttccatactatacaag
atttacaatgtttgctccattatcgaaaagtcatacctaaaacttaagttcagtggcaat
tcatctattcctgagcacatgcaaatattaaatgagatagactcgaaactcagagatcac
aagtacttaaagaccctctcttttgacgaatggaagttgatttgggacaaattagaattt
gctctcaatggtgcatcttccaatattcaaatttctagttttgaattgatttcatcggga
attattgagtctttgtctcaagtcttcaattcagaatcctatgattttggatttgaattc
agcgattgttacaaagctttcatttcagttttctttgtggacaaagcgcgaggttcatcc
tcattcttagcatcacttcaggaagctcttacaaggaccgaatcgtttcaaattatctct
tctggaagttccagtattgttagtctaggttcgtttttccagaatgataatagccaaact
gctatcatggccaagcaaatcaaattgaagttggttgcatcggaaaatgaaactgacagc
aaattaccttcaaacatggaaaacatgattctctctgttcatgcaattgctactttcaag
tcagttgacacctatttgaagcaaaggtttaaatttattgaagaacttagtggaagaaga
gatcgctcaaacggcgatcttggaaatgacgacgaagacgtctcgaagaggaatcctttt
aacatcgaattcttaatcaacggcgaatcagttcccaatgagattaccatttatggtgcg
atttataggtcattgcagaacaagccggatgaaattgttgatccatcaagaatatggtca
actgttcataatatatcatacagaagaattagctctgcagtgactaaggaaagtaaatta
atgaactacagtttccatatcaaggacaatgaattagacatctatgacaagacaacgatc
tatatcctcaaattgttgaaggtcttgttcgagatgaatgcatttgtgaagatcaatatt
cctaatacagttgcaattccagccagtaatttcatgaactggaagctcacagttaaatta
aacagacagttggaagaacccttggttgttgccagcggtacactacctggttggagcatc
catgttacgaagcaatttccgttcatttttcctttggaaactagaatattctttttgcag
tctacgtcatttggttactctcggttgattcatcaatggcaaattaggacgaaccaagga
aacgatgagaataatacaaataataacaacaatcaaagagcacagttaggtcgtccaacc
agacacaaggtgagaatatctagaaaatttatacttcagagcgcaattaaagttctcggt
ctttatggctccacccccagaattttggaaattgaatatttcgacgaggtaggatcaggt
ttggggccaacattggaattctacgcaactgtctccaaagagttctcgaagaagaaattg
aagctatggagagataatgacccactggaagttgatgatgaggcatatgtttcaaatgcc
ttaggtttattcccttccccattggacaaacaccagatttctactgaaaatggtagaaag
gtattgtctttcttctcgtcattgggaaaatttgtcgctagagcgttgctagattctaga
atcgtggattttaactttaatccagttttcttgaaattggtgcagtacttcaacctccac
ggcgtacagaggataaatcacaggaacttaaagaaaatgacaaatatttctagtttgaga
atggttgatccagccttggctgattcagttgaacatttgcttaagtatgtgaaacaattt
ccacaagttggagagatagaacgcgattccatcgtgattgatggctctaccattaaggac
ttatcactttactttgaattgcctgggtaccctgagtttgaattgattgctggtggtagc
gagatacaagttactgcaacaaatcttgagttgtatatcaatagaattttggagtctacc
cttttcactggaattgtgcatcaagccaaatcatttatggacggattttcaaacgtattc
cctgtaaatacgttaataatattctcgtcagaggaattggctggtttgtttggtggagca
gaagaagattggtcaattgatactattacttcagctgtgtatgcaaatcacgggtttaca
aaggaatctgatgctatcaaatcgctaataacaatactcgtgcaatttaacgaagaagaa
cgcagagcattcttacaattccttactggagcaccaaaattgcctattggcggcttcaag
gctcttagaccggagctcacggttgttagaaagcatgctgaagaaggcttgaaggatgat
gattacttaccgagtgtgatgacttgtgcaaattacctcaagctcccgaattattcatca
gaagacctcatgaggaaaagattgcttcaagctattaatgaaggcgctggtgctttcttg
ctctcctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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