KEGG   Scheffersomyces stipitis: PICST_34564
Entry
PICST_34564       CDS       T01023                                 
Symbol
TOP3
Name
(RefSeq) DNA topoisomerase
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
pic  Scheffersomyces stipitis
Pathway
pic03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    PICST_34564 (TOP3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pic03032]
    PICST_34564 (TOP3)
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_34564 (TOP3)
Enzymes [BR:pic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     PICST_34564 (TOP3)
DNA replication proteins [BR:pic03032]
 Eukaryotic type
  DNA Topoisomerases
   PICST_34564 (TOP3)
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     PICST_34564 (TOP3)
   FA (Fanconi anemia) pathway
     PICST_34564 (TOP3)
SSDB
Motif
Pfam: Topoisom_bac Toprim
Other DBs
NCBI-GeneID: 4851720
NCBI-ProteinID: XP_001386841
JGI: 34564
UniProt: A3GHH1
Position
1:2655678..2657528
AA seq 616 aa
MKILCVAEKPSIAREVSRILSGGRFTTRNSRNKFIKNYDFTYNFTSLGICDVTMTSVVGH
ITNMDFPPAYQWGRCVPGRLFDVEVIEKVTKQDVFDNISNEARTASRLMIWTDCDREGEF
IGFEIYKAAFKGNSAIQVGDIWRSQFSHLERSHIIDAASHPRSLDMNSVNAVACRMEIDF
RVGTSFTRLLTDCLKQNRIIEKGGLASYGTCQFPTLGFVVDRYKRVKSFIPEKFWYIAVD
IRKQNQKSSFAWTKGRFFDRMFVTQLYQDCLQTEEGTITNVESKRTTNWRPLPLTTVELQ
KDCARFFRMSAKAALDAAERLYNKGFLSYPRTETDSFPATMDFAGVIAKQTGDGRWGAYA
NSLMANGHEMPRNGSHDDKAHPAIHPVNYVAIDSLTSADEKKVYEYVVRRFLACCSKDAV
GHQTTATLQWGNETFTASGLIVTEKNYLEIYTYKKWETTKQLPPLEEGEKVRISSGQMKE
GETSPPNHMTETELIALMDANGIGTDATIAEHIEKIMQRDYIVKHKQGGKEYIVPTPLGM
GLIEGFDQMEFDNISLSKPFLRKLLENSLQKIVDGERTKADVLEEVKQIYRQAYGVSSQK
MTLLASVCRQIIAQNS
NT seq 1851 nt   +upstreamnt  +downstreamnt
atgaagatcctatgtgtggccgaaaagccgtccatcgcccgcgaggtgtcgcgaatactc
agtggaggcagattcaccacgagaaactcccggaacaagttcatcaaaaactacgacttc
acctacaacttcaccagcctcggtatatgcgacgttacaatgacttctgtggtggggcac
atcaccaacatggacttcccgcccgcgtaccagtggggacggtgtgttcccggaaggttg
tttgatgtagaggtgatcgagaaggtcaccaaacaagacgtgttcgacaacatttccaac
gaagcgcgtaccgcgtccaggttgatgatctggacagactgcgatcgcgaaggcgagttc
attgggtttgagatttataaagccgctttcaagggaaacagcgccatccaggtcggggac
atctggcgtagccagttttcgcatctagaacgaagccatattattgatgctgcatcacat
ccacggctgcttgatatgaactccgtcaacgctgtcgcgtgccgtatggaaatagacttc
cgtgttggcaccagtttcacgcggttgctcactgactgcttgaaacagaacagaatcatc
gagaaaggagggctagcctcttacggaacctgtcagttccccaccctcggcttcgtagtt
gatagatacaaaagggtcaaatcgtttatccccgagaagttttggtacattgcggtagat
atccgtaaacagaaccagaagtcgtcgtttgcttggacaaaaggtcgtttcttcgaccgc
atgtttgtgacacagttgtaccaggattgtctccagacagaagaaggaaccataaccaat
gtagaaagtaaacgaaccaccaactggagacccttgccgttgactacagtcgagctccag
aaggattgtgcgcgattcttcaggatgagcgcaaaagcagctctagatgctgccgaaaga
ttgtataacaaggggtttctttcctacccaagaacagaaactgatagtttcccagctacc
atggactttgctggtgtaattgccaaacagactggtgatggaagatggggcgcctatgca
aatctgttgatggctaacggccatgaaatgccgagaaatggtagccacgacgataaagcg
catccagctatccacccagtaaactacgtagctatagattcgttgacttcggcagacgaa
aagaaggtatacgaatatgtggtccgtagatttttagcctgttgctcgaaagatgctgta
ggtcaccagacaacagccactttgcaatggggtaatgaaacattcacagccagtgggttg
attgttactgagaaaaactatttggaaatatatacatacaagaagtgggaaactacaaag
caattgccgcctctagaggagggagaaaaagtccgtatctccagtggccaaatgaaggaa
ggagaaaccagccctcccaaccacatgacagaaacagaattgattgcattaatggatgcc
aatggtatcggaacggacgccactatcgcagagcatattgagaaaatcatgcagcgagat
tacatcgtcaaacacaaacaaggtggaaaggaatacattgttcctactccgttgggtatg
gggctaattgaaggatttgaccagatggagtttgacaatatttctctctcgaagccgttt
ttacgtaagttgttagagaattctcttcagaaaatcgtggatggcgagcgcaccaaagct
gacgtccttgaagaagttaaacaaatctatcgacaggcgtacggagtcagctctcagaag
atgacgttgttggctctggtatgtcgacagataattgcacagaatctgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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