KEGG   Scheffersomyces stipitis: PICST_86078
Entry
PICST_86078       CDS       T01023                                 
Symbol
SRB8
Name
(RefSeq) subunit of activation mediator subcomplex of RNA polymerase II holoenzyme
  KO
K15163  mediator of RNA polymerase II transcription subunit 12, fungi type
Organism
pic  Scheffersomyces stipitis
Brite
KEGG Orthology (KO) [BR:pic00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pic03021]
    PICST_86078 (SRB8)
Transcription machinery [BR:pic03021]
 Eukaryotic type
  RNA polymerase II system
   Mediator complex
    CDK-module
     PICST_86078 (SRB8)
SSDB
Motif
Pfam: Med12
Other DBs
NCBI-GeneID: 4850896
NCBI-ProteinID: XP_001387308
JGI: 86078
UniProt: A3GF47
Position
1:360390..365432
AA seq 1654 aa
MSKARSRNSLLSSSNRAQFGNSTQDELLKLKFSMEKPDIGLYPLNDLDNGVDLNGDNSRS
QHTAGSGVLSGNEVTYPDYKPWKDHTALPNDKKEQEHQKLNNAAYLNKGYFETPVVANEY
YSARNLIQATVFSSTENCNEVLKELSQHLANAYKTRNEIINKIKYESNNFKIPPRVTLTA
SKKESWLKDLANPDLALSKIAEKIPHGIRNKILIDAVCNKSVPINRALWFTKCVLFGELV
ALRRKHQSRMSLNSPIPQSLDINTPEKFEIHWLQEWTQQVADYIYKFSKESSNFNTIERK
QYYMNKMTYLLTYIQALYVEFLLDKSFFLALIIKFLKEGLPLDPLHVSELLSSTRSETDD
LIQESWIEDLDLNYGQRLFALTLIKIFWNDILKFDYICKELSETLLLNYLFISKINAYSF
KQSHVQNHKASIPEPLRQKILDMIGDTITYLFKFNTNVFIIPNYWMLINGVLFTILLNKN
VTKTEGELDEISKQFDLIKYRNESLILNMRNVQPSITDRATPNSAGRRGSSIWNQSFVSA
AESTATKIDIFDNEATFINRSSDDILKIISQLDSLKLNDELANFLKPVTSSSALTSTAIK
GCPKWRTNLKVVLYWCITRHRNSRESSEDILIICNFLKRKVLQTLGPTRSSSQLKAEFES
EILDIIYNIADTNSSKVVNYDLYVLINELYQLKVLTIASYLRKLIASGIFYVAPDAEDNI
LNDNSNSLVKTHLSILQNLPVINNRQCDSILKKWTSTGFNFKEKFEMGQEILKRELIDRI
VNNTFDDQFESHIVYVKDLNVGLKFLLVNWVTNELKSAITESPKLIHINPLIISNLFNFY
SICDNLTVFFKVLVKFILKNEGGMIIFYLESLYLIARLIIKHFKLVKFIAGNSYGSNSTA
YELFKLIIQNYKDCKTREFDYFKFDQVWNFIDTAVESNYSSDKNTDSRSSGKRSGIFNKE
QFDSPMKINTSENVIAKMEDRYTSADFRNDLDLLLESTFQPMDSNEVSEVVATLKLEFEE
NEMKSHRNVVPKVLDLLKSNLTEESEGLAAKLLINSQYLIKSDDVNAFDKLVQDYILELV
KSDMEILLVAKFLKKLIVHEIIRINDLFAFFEPIAEDPAFRVKLKALMFDLVIGLSDEER
EYLSNSQILQLEIMRQWYRERSTSSFLVLILKGIKTIEGSIFDCPLMEKYGSSIFRILNA
LIVANTKLLSDELISKISTEDSIRLLSTLNNENFTPINSLQDLERIASEVDEFNLPIFQL
LLRVLTIKELSPLQENEIQERLKVLLESFLENLSFGFTPMNSYFGELFIYLPWEYVVSIL
GMLEDKFLCSTTFNFDQWDNDKSVLSLTNSVGNTNLLPVFNDYFKKFSSSSSNVVESSSS
FFQALSKFLSKLLLIVNSDNCLEDTFEDTSSAISIFLRILIIHKLTLTRLIVTQDGEQFQ
FIKNLILLINSKFIAEGNEKLRILLYDLLLLMKSSVTEEVSKQTENELSEGTSPGFGMTA
QSPPPVEDASKITEPLSSARPSSEAASFQTNPISTYDQVSSLFNLPEPTETNPFKDYITE
DRVECALTLSEDELQSGGDIHGFNESNLVLISSSNDSTFSGAFALITNPHQRPKGQPFKL
RSFEILEGTSTTSLNDGCINLQLFDSYTTKENPP
NT seq 4965 nt   +upstreamnt  +downstreamnt
atgtccaaagcccgaagtcgcaacagtttgctttcgtcaagcaatcgggctcagtttggc
aattccactcaggatgagcttctcaagctcaaatttctgatggaaaagcccgatatcggt
ttgtatccacttaacgacctagacaatggggttgaccttaatggagacaatctgcgatcc
caacacactgccggttcgggcgttttgagtggcaacgaagtcacgtatccagattataag
ccctggaaggatcatacagccttgcccaacgacaagaaggaacaagagcaccaaaagttg
aacaatgcagcctatctaaacaagggatattttgagactcccgttgtagctaatgagtat
tactcggctcggaatttgatccaagcaacggttttttcgtccacagaaaactgtaatgag
gtcctcaaagaactttcccagcatttggccaatgcatacaagaccaggaacgaaatcatc
aacaaaatcaaatacgagtccaacaatttcaagatcccaccaagagtaacattaacagcc
tctaagaaggaatcttggttgaaagatcttgccaatcctgatttggctttgctgaagatc
gcagagaaaatcccccacggtatcagaaacaagattcttattgatgccgtttgcaacaaa
tctgttccaataaacagagccttgtggttcactaagtgtgtgctatttggggaactagtt
gctttaagaagaaaacaccagtcacgaatgtctctcaacagtcctattccgcagtctctt
gacataaacacacctgaaaagttcgagatccattggcttcaagaatggactcagcaggta
gccgactacatctacaaattttccaaagaactgctgaacttcaatacgattgagcggaag
cagtattatatgaacaaaatgacctacttgctaacgtatatccaggcattgtatgtagag
ttcttgcttgacaagagtttcttcttagctctcataatcaaatttctaaaggagggactt
cctttggatccgcttcatgtatcagaattgctatccctgacaagatcagaaactgacgac
cttatccaagagtcttggattgaagacctagacttaaactatggtcagagactatttgca
ttaacccttatcaaaatcttctggaacgatatcctcaagtttgattatatctgcaaggaa
ttaagcgagacattgctcttgaactatctcttcattctgaagatcaatgcctattcattc
aaacagtcgcatgttcaaaatcacaaggcgtccattccagagcccttgcgtcaaaagatt
ctcgacatgattggggacactataacctacctcttcaagtttaataccaatgtctttata
ataccgaactactggatgcttatcaatggagttctcttcaccattttgctcaacaagaat
gtgaccaagacagaaggcgaacttgatgaaatactgaaacagttcgatttgatcaagtac
agaaatgaaagtttgatcttgaacatgagaaacgtacaaccttctataacagacagagca
actcctaattctgctggaagaagagggtcctcaatatggaaccaatccttcgtatcagct
gccgaatcgactgccaccaaaattgatatttttgacaatgaagccacatttataaaccga
agttcagatgatatcttgaagattataagtcaattggattcgttaaaattgaacgatgag
cttgccaacttcttgaaaccagttacttcttcctcggctttgacatctactgcaataaaa
ggttgtcctaaatggaggacaaatctaaaggttgtactttattggtgtattaccagacat
cgcaactccagagaatccagtgaagacattctcattatttgtaatttcctcaaaagaaag
gtattgcaaactcttggcccaactcggagttctagtcagttgaaggcagaatttgagagt
gaaatattggacataatctataatattgccgacaccaactcctcgaaggtagtgaattat
gacctttatgttttgatcaatgagctttatcaacttaaagttcttaccattgcatcttac
ttaagaaaattgattgcttcaggtatattttatgttgctccagatgccgaagacaatatc
cttaatgacaattcgaacctgcttgtcaagacgcatctttctattcttcagaacttgcca
gtaattaacaataggcaatgtgacagcattctcaagaaatggacttccactgggttcaac
ttcaaagaaaagtttgagatgggacaggagatcttgaaaagagagctcatagacagaatt
gtcaacaacacctttgatgaccagttcgagtcgcatattgtttatgtcaaagatcttaat
gttggattgaagttcttgctagttaactgggttactaatgaactaaagtcagctataaca
gaatccccaaagttgatacacataaacccattgatcatcagcaatctttttaacttctac
tctatctgcgataatttgaccgtttttttcaaagtattggttaagttcattttgaagaat
gaaggaggaatgataattttctatttggaatcactctacttgattgccagattgatcata
aagcatttcaaactagtcaaattcattgcaggcaatagctacggctcaaattcgactgcc
tacgagctattcaaattgataattcagaattataaggattgcaagacaagagagtttgat
tacttcaaatttgaccaagtatggaactttatcgacactgctgtagagagtaattatctg
tcagacaaaaataccgactctcgttctagcgggaaaagaagtggcatattcaacaaggaa
cagtttgattctccaatgaagatcaatacgctggaaaatgttattgcgaaaatggaagat
agatatacgtcagccgattttagaaatgatctcgacttgcttctcgagtccacatttcaa
cctatggatagtaatgaagtcagtgaagttgtggctacgttgaagttggagtttgaagaa
aacgaaatgaaatcgcaccggaatgttgtaccgaaagtattggatttgttgaagtcaaac
ctcacagaagagtcggagggccttgctgcgaaactcttgattaattcacaatatctaatt
aaaagcgatgatgtcaatgcatttgacaaactagttcaggattatattttagaattggta
aagtcagatatggagatccttttagttgcaaagttcttgaagaaattgatcgttcatgag
attatccggatcaatgatctttttgcattcttcgaaccaattgctgaagaccctgctttc
agagtcaaattgaaggctttgatgtttgatcttgttattgggttaagtgatgaagaaagg
gagtatctctcaaatagtcagattttgcagctcgagataatgagacagtggtatcgggaa
agatcaacttcatcttttttggtattgattctcaagggtataaaaacaatcgagggttct
atttttgactgtccattaatggaaaagtacggcagtagcatatttaggatcttgaatgcc
ttgattgtggccaacaccaaattgttgctggatgaattgatatccaaaatttcaacagaa
gatagtatacgcttgctcagcacactaaacaatgagaattttacaccaattaacagccta
caagacttagaaagaattgcatcagaagtggatgagtttaatcttcctatcttccaactt
ctcttgagggtattaacaatcaaggagttgctgccacttcaggaaaatgagattcaagaa
cgtttgaaggtattacttgaaagtttcttggaaaaccttagttttggattcacgcctatg
aattcatactttggggagctattcatatacttaccgtgggaatatgtagtctcaatcttg
ggtatgttggaggacaagtttttgtgttctacgacgtttaattttgaccagtgggacaac
gataagagtgtactttcgttgaccaatctggttggtaatacgaacttactaccagtgttc
aacgattatttcaagaagttttcgtcatcttcttcaaatgtagttgagtcatcttcttca
ttcttccaagctcttagtaagtttctatccaagctcttgcttattgtcaattccgacaat
tgtttagaggatacatttgaagataccagcagtgcaatttcgatttttttgcggatttta
atcatccacaagcttactttgacgaggcttattgtgactcaagacggcgagcaatttcaa
ttcattaagaatttgattcttttgataaactcaaagttcattgctgaaggaaacgagaag
ttgaggatcttgttgtacgatttgctcttgttaatgaaatcgtctgttacagaagaagtc
agcaaacagactgaaaatgaattatctgaaggaacttcgcctgggtttggaatgacggct
cagagtcccccacctgtagaagatgcgagcaagataacagaacctttgagttcggctcgt
ccgagttcagaagcagcatcttttcaaacaaacccaatctcaacatacgaccaagtctcc
agtttgttcaatttgccagagccaaccgaaacgaatccttttaaggactatatcacagaa
gatcgtgttgagtgtgcgcttacactttccgaggatgaacttcagagtggaggagatata
catggcttcaacgaaagcaacttggttctcatttcttcatcaaacgactcgacgttctcc
ggggcgtttgctcttataaccaacccacaccaacgacccaagggccaaccgttcaagttg
cgcagtttcgagattctcgagggaacaagcacaacatctttgaacgacggatgtattaac
ttacaactctttgactcttatactacgaaagaaaatcctccataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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