KEGG T01333: PITG

Phytophthora infestans: PITG_09292

Entry

PITG_09292        CDS       T01333

Name

(RefSeq) Dicer-like 1 (DCL1)

K11592

endoribonuclease Dicer [EC:3.1.26.-]

Organism

pif Phytophthora infestans

Brite

KEGG Orthology (KO) [BR:pif00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pif03036]
    PITG_09292
Chromosome and associated proteins [BR:pif03036]
Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    PITG_09292
   microRNA pathway
    RISC loading complex
     PITG_09292

SSDB

Motif

Pfam:

Ribonuclease_3 Ribonucleas_3_3 Dicer_dimer DEAD DUF4640 eIF-3c_N

Other DBs

NCBI-GeneID:

9461771

NCBI-ProteinID:

XP_002903577

UniProt:

D0NBC4

AA seq 1664 aa
MIMDAALWEHQREIAAVARHRSVLVSSSQPVGKTFVSCALLSEAASSSNTQVNALAIAAS
PAGRSALQAQLARLCGCRVVCSDSYKANQWLEDPEFARSTLNTVRGQIAILSPLILQEML
RKKILDLTDVGLLVAEDWDLVHAELPSFSKLLTNLMDEMPTATTLRIFATSRLPASKMDW
DPVTNPLLKHIHVFNMLPVLSSTSMEPSFPPIHCEVFQNKDMSREEEETSVRDFLLGAND
KKVDLVHVFRMELELGNSAAVYDERKKQDKVNRFIQDAEVVKEHLGLWCLWKFVELELQA
NLQACIVDDPDNVNNRKKRKQQEDDPDIDDSMMGEGIDSDFTEDGAVGEEEGTDEMMECS
NAEDSAGKEGKSAQVKTDRLIARYIGNVELDEDTKLKVRPILKVLSWLSAQSKLCGVLEA
SPRLLKTAEIVRNRFSNSPGTKQVRAWVFLERRCHCRVVAEYLTAALAGLKLPPSCCMLG
SSNARISGALRFSSFLKVMQMFTNYETKIMVTTSVAKKSQKIRMAPPPCDLVVVMNELLE
PNKLYEYGKRADITRGFIKYITEDTVLARKKFEGLVRQMQEFIHLEQEENRVHASIAQPA
STSLEISSLQMPQPPSTSTEATTPSSADNTLASLQAESRLSVIPERVQPVVNPYELIHQD
TGAILNVTNSVSCLSKFCDTLPGLDTYDRRPQYIVRRISVVKHMAPSLKRAKKKLSKYNS
KLTDKIDVLKAEAEQRANAAMDENGDESKDGDEESSATDSRFHFSATLKLPGALGIKKQL
HSQQVETQDEAKGIVAFKACQELLKKGLLDRHFRSKLLDDQVATIHKDDMGTSSSNGDST
ATGDDTIVLGENDEAPAQLTDLSTQSSYDLPPVSAVELSLRPIRSLTQEAASSSEEGEEW
STTMCFYGLSGAHYAILATNELYTGNTNTGWRYDFATSGVMSPEIQPITLAKRPMELTLT
KQELHDVLHFHLVVMRLACMGVQDAVRDVDIASDNVWNEFSEQNDKGYLVVPSVMDESKQ
PPTLSLDWNYVREIIGKPLLEPLWPLPTTGATGNTKDTTDEWICVPMYRLNVSYVVQAIS
DRTVDDIRKEYLADEKSWTTHLKKGKSTPGNPILGRWHTRQQLEEADADQPLVYGIQVPP
IVPIIRRVMQRNNDEGSIAQYKTKFNERLLVPQYTSRLRLSKSRFFDAMGLVPLLYEFER
KCQISHLMGKIGLELDMTLLDDATTKPAYERLEILGDTFLKLETSWYMYEQRKDIYQEGQ
LTQLRRDIIRNDRLNQFALAARLHHYMLYPAEVEQHPFQCWKPSCMGKTPDPVVAPAKWI
ADVLEAITGAYLVGQGEKGARYFLKWIGVTVLEHPSTNFARPFYPDCFPNELYDAAMTSR
GGAELPLSLNFKVAQFEDLPKRLMLLQQRLKYTFRNKRLLLEAVTHPSVGQLVLHIDQMD
ANGADGNADGNAGGDIEVMSRSQKKKKTVWKGDYERLEYLGDALIEYLTLSYAFLMYDKW
LPGSLSQWKSATVSNDALGKTALACFGVDECIFAGAVRIDRETMDRVAGIERKYARAEAS
TGLSPVFEAVGVSKKKAKSKNAPNGGNSHTLPKMFADVFEALVAAVFLDSGRDLQLVRDV
FMGPLLQTVGQDAYAYVCHESGLAMDNTGDELMEDLVFSSDEED

NT seq 4995 nt +upstreamnt +downstreamnt
atgatcatggacgccgcgctgtgggagcatcagcgggagattgcagccgtagcacgtcac
cgcagcgtgttggtgagcagctctcagcccgtgggcaagactttcgtgagctgcgcattg
ctgtccgaggctgcgtcctcaagtaatacgcaagttaacgcactggcaattgccgcatcg
cctgcgggtcggtccgctctacaagcacagctagcgagactatgtggttgtcgcgtggtc
tgcagcgatagctataaagcaaaccaatggctggaggacccagaattcgctcgtagcaca
ctgaacactgtacgcggccagatcgcgatcctgtcgccgcttatactgcaggaaatgctg
cgtaaaaagattttggatttgacagatgttggtctgctggttgcggaagactgggaccta
gtgcacgcagagttgccgtccttctccaagctgctgacgaatctgatggacgagatgccg
acggccacgacgctgcggatctttgcgacgtcaaggctgccagcgtccaagatggactgg
gacccggtaacgaacccattgcttaaacatatccatgtgtttaacatgttgccggtactg
tcgtcaacgtccatggagccaagtttccctccgatacattgcgaagtgtttcagaacaag
gacatgagcagagaagaagaggaaacgagtgtgagggactttttgctgggtgcaaacgac
aagaaagtggatttggtgcatgtgtttcggatggagcttgagctggggaactcagcggca
gtgtacgatgagcgcaaaaaacaggacaaggtgaacagattcatccaggacgctgaagtc
gtgaaagaacatttgggactgtggtgtttgtggaagttcgtggagctagagctgcaggcc
aatttacaggcgtgtattgtggacgacccagacaacgtgaacaacaggaagaagcgcaag
cagcaagaagacgatcctgatatcgacgattcgatgatgggagagggcattgatagcgac
ttcacggaagatggagcggtgggtgaggaagagggcacggacgagatgatggagtgcagc
aatgcagaagatagcgctggtaaagaaggcaagtcggcacaagtgaagacggatcggcta
attgcgagatatattggtaatgttgaacttgatgaggacacgaagctcaaagttcgacca
atcttgaaggttttgtcgtggctgtcagcgcagtcgaagctttgtggggtgttagaggcc
tcgccacggttattaaagacagctgagatcgttcgaaaccggtttagcaactcgccggga
acgaaacaagtccgagcgtgggtattcctcgaacgacggtgccactgtcgcgttgtagct
gagtatttgactgctgccttggcaggtttaaaactgcctccaagttgctgcatgctcggt
agtagcaacgctcgtatatcgggggcgttgcggttttcgtcctttctgaaagtgatgcag
atgttcaccaattacgagacgaagatcatggtgaccacttcggtggcgaagaaatcgcag
aagatacgcatggctccgccgccgtgtgacctcgttgtggtaatgaacgagttgctggag
cctaacaaactgtacgaatatgggaagcgagcagatatcacgagaggtttcatcaagtat
attacggaggacactgtgctggctcgcaagaagttcgaaggtctcgttcgccagatgcag
gagttcattcacctcgagcaagaagaaaaccgagtccacgcctcgatagctcaaccagct
tctacttctttagagatcagcagtctacagatgccgcaacctccatccacttcgacagaa
gctactacaccaagctcagcggacaatacgctggcctcgctgcaagctgaaagccgactc
tcggtcattccggaacgggttcagcctgtagtgaatccatacgaactgatccatcaagac
acaggagcgattctgaacgtgacgaacagcgtgtcgtgtttgagcaagttctgtgataca
cttcctggtttggatacctacgaccggcggccgcagtacatcgtaaggcgcatttctgtt
gtcaagcacatggcaccgtcactgaaaagagcgaaaaagaagctgtcgaagtacaattcg
aagcttacagacaaaattgacgtgctgaaagccgaagcagagcagcgagccaacgctgcg
atggacgaaaacggggacgaaagcaaagatggcgacgaggaatcatctgcaacggattca
cgttttcacttttcggctacattgaaactaccaggcgccttgggtataaagaagcagctt
cattcgcagcaagtagaaacgcaggatgaagcaaagggcattgttgccttcaaggcctgc
caagaacttttgaagaaggggctgttggatcgacactttcgctccaaactcctagacgac
caagtggcaactattcacaaagatgacatgggaacgagcagtagcaatggtgacagtact
gcgacaggagatgatacgatcgtgctgggagagaacgacgaagcgcctgctcagcttact
gatctgtcgactcaatcgtcgtatgacttaccgccagtaagtgctgtggagttgagtttg
cgaccgatccgaagcctcacacaagaagctgccagtagtagtgaggaaggcgaggagtgg
tcgacaacaatgtgcttctacggcctcagtggagcacactacgctattctggcgactaat
gagctgtatactggcaataccaacacgggctggcgctacgatttcgcaacaagcggcgtc
atgtcgcccgagatccagccaataacactggcaaagcgtccaatggagctgactttaaca
aagcaggagcttcacgatgtgctgcactttcatttggtggtaatgcgtctcgcctgtatg
ggagttcaagacgctgtgcgtgatgtggacattgcgagtgacaacgtttggaacgaattc
tccgaacaaaatgacaaggggtatctggtggtgccgagcgtgatggatgagtcgaagcaa
ccaccgacactgtcactggactggaattatgtacgtgagatcatagggaagcctttgctt
gagcctctatggccactcccgacaacaggtgctactggaaacactaaggacacaactgac
gagtggatctgcgttccaatgtatcgcttaaacgttagctacgtcgtgcaggctattagt
gatcgcactgtggatgatatccgcaaggagtatttggcagacgagaagtcgtggacgact
cacctgaaaaagggaaagtcgactccaggaaatccgatcctgggtcgttggcatacccgt
cagcagctcgaggaagctgacgcggaccagccgttggtatatggcattcaagtccctccc
atcgtccccattattcggcgagtcatgcagcgcaataacgacgaaggaagcattgcgcaa
tacaagaccaagtttaacgagcgcttgctggtcccgcagtacacgtctcgcctgcgtctg
agtaaaagtcggttcttcgatgcgatgggactcgttccgctactctacgagttcgagcgc
aagtgtcagatctcgcacctcatgggaaaaatcggtctggaactcgatatgactttgctg
gatgacgcgaccacaaagcctgcttacgaacggctggaaatcctcggggatacgttctta
aaactcgaaacctcgtggtatatgtatgagcagcggaaggatatttatcaggaagggcaa
ttaacgcagctgcgtcgtgacattattcgcaacgacagactcaaccagttcgctctagca
gctcgtcttcaccactacatgttgtacccggccgaagtggagcagcatcctttccaatgt
tggaagccttcgtgtatgggtaagacgcctgatcccgtggtggctcctgccaagtggatc
gctgatgtcctagaggcaattacgggtgcatatctggttggtcagggagaaaagggcgct
cgttactttctcaagtggattggtgtcactgttctcgaacatccgtctaccaacttcgcg
cggccgttttatccggattgctttcccaacgagctttacgacgcagcgatgacgtcgcgt
ggaggagcagaacttccattaagtttgaatttcaaggtggcacaattcgaagacctcccg
aaacgactcatgcttcttcagcagcgtttgaagtacacgtttcgcaataagcgcttattg
ctggaggctgtgacacacccgtcggttggtcagcttgtcctgcatattgaccaaatggat
gcgaatggtgctgatggcaatgctgatggcaatgctggaggtgacatcgaagttatgtca
cgttctcagaagaaaaagaagacggtatggaaaggtgactacgagcgactggagtacctt
ggcgacgctttgatcgagtatttaactctgtcttacgcttttctgatgtacgataagtgg
ctgcctggatcgctttcgcagtggaagagtgcgaccgtatcgaatgacgcgttaggcaaa
acagcgctggcttgttttggtgtggacgagtgcattttcgctggagctgttcgtatcgat
cgcgagacgatggaccgtgtcgctggtattgaacggaagtacgcgcgagctgaagccagc
acggggctgagtccagtgtttgaagctgtcggggtatcgaagaaaaaggcaaagagcaaa
aatgctccaaatggtggcaacagtcacacgctgccgaaaatgtttgctgacgtcttcgaa
gcgctcgtagctgcggttttcctggactcgggtcgtgatttgcagcttgtccgcgatgtt
ttcatgggtccactgctgcaaacggttggacaggatgcctacgcctacgtctgtcatgaa
agtggcctagcgatggacaatacaggcgacgagttgatggaagatttggtgttctcgagt
gatgaagaggactaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (51)   

Download RDF

DBGET integrated database retrieval system