KEGG   Pigmentiphaga sp. H8: EGT29_03985
Entry
EGT29_03985       CDS       T05719                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
pig  Pigmentiphaga sp. H8
Pathway
pig02020  Two-component system
pig02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pig00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    EGT29_03985
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    EGT29_03985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pig03021]
    EGT29_03985
Transcription machinery [BR:pig03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     EGT29_03985
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID Xre-like-HTH HTH_38 HTH_IclR HTH_Crp_2
Other DBs
NCBI-ProteinID: AZG07095
UniProt: A0A3G8GG38
Position
complement(813631..815106)
AA seq 491 aa
MLKPGLQLRTSQHLALTPALQQSIKLLQLSTLELEHEIEQILQENPLLEREDDPVAATLR
VDADGSMHTTTPASPEADAEPGGEAVEAPSPADAGDAPDLPDMPELHRPGGEHDDDTAPQ
LAAPDASLREHLLGQLALTQATPRDAALVTALVDELDDNGYLDVSLEELAALFPPELEID
ADELRSALGLLQSFDPAGVGARNISECLCLQLRVPDLDCLPEARDADVLALARQIAAQHL
PLLGARDYAKLRKALGCNDDQLRAAQSLIRRLDPRPGSRYSSPAADYVVPDVIVRKAGNQ
WRAMLNGEAMPRLRINQMYAQILKSERSSAHPGLSSQLQEARWLIRNVQQRFDTILRVAQ
AIVDRQQGFLNHGEVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPLGTFELKYFFGS
HVATETGGAASSTAIRALIKQLIGAEDPTQPLSDSQLAQTLGEQGIVVARRTVAKYREAL
KIPPVSLRKSI
NT seq 1476 nt   +upstreamnt  +downstreamnt
atgctcaaacccggactccaacttcgcacctcccagcacctggcgctgacgccggcgctg
cagcagtcgatcaagctgctgcagttgtcgacgctcgaactcgaacacgagatcgagcag
atcctgcaggagaacccgctgcttgaacgcgaggacgaccctgtggcggccacgctgcgg
gtcgacgccgacggcagcatgcacacgaccacgcccgcctcgccggaagccgacgccgaa
ccgggcggcgaggccgtggaggcgccgtcgccggccgacgccggcgacgcgccggacctg
cccgacatgccggagctgcaccgccccggcggcgagcacgacgacgacaccgcgccgcaa
ttggcggcgcccgatgcctcgctgcgcgagcacctgctgggccagctcgcgctgacgcag
gccacgccgcgcgatgcggcgctggtgacggcgctggtcgacgaactggacgacaacggc
tacctggacgtgtcgctggaagaactggccgcgctgttcccgcccgagctggaaatcgac
gccgacgaactgcgttcggcgctggggctgctccagtccttcgatccggccggcgtgggc
gcccgcaacatctccgaatgcctgtgcctgcaattgcgcgtgccggacctcgattgcctg
cccgaggcccgcgatgccgacgtgctggccctggcccgccagatcgccgcccagcacctg
ccgctgctgggcgcgcgggactacgccaagctgcgcaaggcgctgggctgcaacgacgac
cagctgcgcgcggcccagagcctgatccgccggctcgacccgcgacccggttcgcgctat
tcgtcgcccgccgcggactacgtcgtgcccgacgtgatcgtgcgcaaggccggcaaccag
tggcgcgccatgctcaacggcgaagccatgccgcggctgcgcatcaaccagatgtacgcg
cagatcctgaagtccgagcgcagctcggcccatcccgggctgtcctcgcagctgcaggag
gcgcgctggctgatacgcaatgtccagcaacgcttcgacaccattctgcgcgtggcccag
gccatcgtcgaccggcagcagggtttcctcaaccatggcgaagtcgccatgcggcctctt
gtattacgcgaaatagcagatacactaggcttgcatgagtcgacgatctcacgcgtcact
acgcagaaatacatgctcaccccgctggggactttcgagttgaagtatttcttcggcagc
cacgtcgccacggagaccggaggagcggcatcgtccacggcgatccgtgcgctgatcaag
caactcattggtgcggaggatcctacccagccactatccgacagccaacttgcgcagacg
ctgggggagcagggtatcgtcgtggcccgccgcacggtggccaaataccgcgaagcgctc
aagattccgccggtttccctgcgtaagagcatctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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