KEGG   Paenibacillus sp. IHBB 10380: UB51_21335
Entry
UB51_21335        CDS       T03836                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pih  Paenibacillus sp. IHBB 10380
Pathway
pih03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pih00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UB51_21335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pih03019]
    UB51_21335
   03009 Ribosome biogenesis [BR:pih03009]
    UB51_21335
Enzymes [BR:pih01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     UB51_21335
Messenger RNA biogenesis [BR:pih03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     UB51_21335
Ribosome biogenesis [BR:pih03009]
 Prokaryotic type
  rRNA helicases
   UB51_21335
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1
Other DBs
NCBI-ProteinID: AJS60572
UniProt: A0A0D3VFY4
Position
complement(4701773..4703218)
AA seq 481 aa
MSTQHFKDYTLSEDIVRALDSLGYKHPTEVQREVIPMALDKRDLVVKSQTGSGKTASFGI
PICDMVDWKENKPQALILTPTRELAAQVKEDITNIGRFKRIKATALYGKQPYAPQTAELK
QKSHVVVGTPGRVLDHIERGTLALECLEYLVIDEADEMLSMGFIQQVESIIQKLPRKRVT
MVFSATLPKDIEKLCYKYMTNPTQIEIKATGITTATIEHSLFEVREGDKFSLLKDITIVE
NPDSCIIFCRTQEHVNQVCEQLTNADYTCSKIHGGMLQEDRFEVMNDFKRGQFRYLVATD
VAARGIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKTGKAITFITPFEDKFLNEIEGY
IGFNIPKGSVPSREEVTSKKAAFEGKIGIEPTLKQDKNEQLNKEIMKLYFNGGKKKKIRA
VDFVGTIAKIEGVTADDIGIITIQDNVSYVEILNGKGPHVIDVMKNTTIKGKLLKVHKAN
K
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgagtactcaacatttcaaagactatacattaagtgaagacatcgtaagagcgcttgat
agtttggggtataagcatccaactgaggttcaacgtgaagtcataccgatggcgctggac
aagagagatcttgtcgtgaaatcgcaaacaggaagtggaaagacggcatccttcggtatt
ccgatctgtgacatggttgattggaaagaaaataagccacaggcgttaattctaaccccg
actcgtgagcttgccgcacaagtgaaagaagatattacgaacattgggcgattcaaacga
atcaaagcgacagcactatatggcaagcagccctatgctccgcaaaccgcagaattgaag
caaaaaagccacgtcgtggtaggtacacctggacgagttctagatcatattgagagaggg
acgcttgcattagagtgccttgaatatcttgtgatcgatgaagcagatgagatgttaagt
atgggatttattcagcaagtggagtctattattcagaagctacctagaaaacgggttacg
atggtattctcagctacgttgcctaaggatatagagaagctctgttataaatatatgact
aatcccactcaaattgagatcaaagctacgggaattacgacagcgaccatcgagcattcg
ttatttgaagtaagagaaggggacaaattctctctgctgaaggacattacgatcgttgag
aatccagatagctgtattattttctgtcgtacacaagaacatgtaaatcaggtgtgcgag
caattaacgaatgcagactatacctgttccaagatccatgggggtatgctgcaagaagat
cgatttgaagtgatgaatgatttcaaaagagggcaattccgttacttagtggccacagat
gttgctgcaagagggattgatatcgataatatcacgcatgtgattaattatgatttaccg
cttgagaaagagagctatgtgcatcgtacgggaagaacaggacgcgcaggtaagacgggg
aaagcgatcacgttcataaccccttttgaagataaattcctgaatgaaattgaaggatac
attggctttaacattcctaaaggaagtgttccttctagagaagaagtgacaagtaagaag
gccgcttttgaagggaaaattgggattgaacctacgcttaaacaggataagaatgaacaa
ttaaacaaagaaattatgaagctctactttaatggtggtaagaaaaagaaaattagagct
gtagatttcgtgggaaccattgcgaaaattgagggcgtaactgctgatgacattggtatt
attacgattcaagataacgtatcctatgtggagatattgaatggtaaaggtcctcacgtc
attgatgttatgaagaatacgacgatcaagggtaagctattgaaagttcataaagctaat
aaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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