KEGG   Pediococcus inopinatus: PI20285_03360
Entry
PI20285_03360     CDS       T05337                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pio  Pediococcus inopinatus
Pathway
pio03030  DNA replication
pio03410  Base excision repair
pio03420  Nucleotide excision repair
pio03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pio00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PI20285_03360
   03410 Base excision repair
    PI20285_03360
   03420 Nucleotide excision repair
    PI20285_03360
   03440 Homologous recombination
    PI20285_03360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pio03032]
    PI20285_03360
   03400 DNA repair and recombination proteins [BR:pio03400]
    PI20285_03360
Enzymes [BR:pio01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PI20285_03360
DNA replication proteins [BR:pio03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PI20285_03360
DNA repair and recombination proteins [BR:pio03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     PI20285_03360
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PI20285_03360
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc BCAS2 HHH_5
Other DBs
NCBI-ProteinID: AVK99745
Position
653996..656659
AA seq 887 aa
MTRKKLLLIDGNSVAFRAFFALHNALSKFTNQDGLHTNAIYGFNKMLDHILEIVKPTDAL
VAFDAGKTTFRTEMFDNYKGGRSKTPPELSEQMPYLRELLKAYGIKSYELANYEADDIIG
TLSKEAETAGYEVTIVTGDRDLTQLSSEKTTVSVTVKGVSEVEHYTPEHVQEKLGLTPAQ
IIDMKGLAGDTSDNYPGVTKVGEKTAIKLLQQYDSVEGVYEHIDELKASKMKEHLIEDRD
NAFLSKKLATINREAPIAISLADLAYSGKNPATLVDFYERMNFQSFLKQIRSTEGFEAPQ
TMKKIAFTELTTDNLNEVAKLKGEMAFYLEMPEKNYHVSDLVGFGIGREDKWFVSRNVDL
LTTAIFKKLFTDSNNQISVFDLKRTYVGLNRLGVSFTNGKNDILLESYLLDTNDNSNDLG
ALAHRHGYQDIKTDEEVYGTGVKRHIPDDDAEFLTHLAAKLRAIQQLVPQLKSELEQNEQ
IKLYTDIELPIALVLSKMEIAGVRVDTNRLEQMESEFTERLTEIEQTIYNEAGEEFNIKS
TKQLGSILFEKLGLPSSKKTKTGYSTAVSVLEGLRGQAPIIDNILIYRQISKIQSTYVKG
LLKVVHSSDQKVHTTYLQTLTQTGRLSSIDPNLQNIPIRLEEGRKIRQAFVPSADNAQIF
SSDYSQIELRVLAHITGDKNMQAAFKNGEDIHASTAVRIFGLKDASEVTPNIRRQAKAVN
FGIVYGISDYGLSQNIGISRKQAKTFIDTYFQEYPGVKAFMDQIVETARKQGYVETIAHR
RRYLPDINSSNHNQRSFAERTAMNTPIQGSAADIIKIAMIQMQDELEKRQLKTEMLLQVH
DELIFEVPDDELALVKDLVPSIMDSAVKLDVPLKVESAFGKSWYNAK
NT seq 2664 nt   +upstreamnt  +downstreamnt
atgacccgaaaaaaattacttttaatcgatggaaatagtgtggcgttcagagcctttttt
gcgctccataacgcgctaagtaaatttacaaatcaagatgggttacatacaaatgcaata
tatggatttaacaaaatgcttgatcacattttggagattgttaagcccacagatgcgttg
gtggcatttgatgctgggaaaacaacttttcgaaccgaaatgtttgataactataaaggt
ggacgttccaaaactccacccgaactttccgaacaaatgccttatttgcgtgagttgcta
aaggcttatggcattaaatcttatgaactagctaattatgaagcggatgacattatcgga
accctctcaaaagaagcggaaacggctgggtatgaagttacgattgtaaccggagatcgg
gacttaacccaattatctagtgaaaaaacaactgtttctgtaactgtgaagggagttagt
gaagttgagcactatacgccggagcatgtgcaagaaaagcttgggttaacaccagcgcaa
attattgatatgaaaggattggctggtgatacatcagacaattatcccggagttaccaaa
gttggcgaaaaaacggccattaaattattacaacagtacgattctgttgaaggtgtttac
gaacacatcgatgaattaaaagcttccaaaatgaaggaacatttaatcgaagaccgtgat
aatgcctttttaagcaagaaactggctacaattaatcgtgaagcaccaattgcgatttcg
ttggcggatttggcatattcaggtaaaaaccccgcaactttagtggatttttacgaacgg
atgaattttcaatcttttttgaaacaaattcgttcaactgaaggttttgaagccccacag
actatgaaaaaaatcgcttttacagaactaactacagataacttgaatgaggtggctaaa
ttaaagggtgagatggctttttatttggagatgcccgaaaaaaattatcatgtgtcagat
ttagtgggattcggaattggtcgtgaagataagtggtttgtttctagaaatgttgattta
ttaactacggccatatttaaaaaacttttcacggattcaaacaaccaaataagtgtcttc
gatcttaaaaggacctatgtgggattgaaccgcctgggggtatccttcacaaacgggaaa
aatgatattcttttggaatcgtacttgttagataccaatgataattctaacgatcttggt
gctttagctcatcgccatgggtatcaagatattaagacagacgaagaggtttatggaact
ggtgtgaaacgtcatattccagatgacgatgcagaatttttaacacatttagcagccaag
cttcgggctattcagcagttggtaccgcagctaaaaagtgagcttgaacaaaacgaacaa
atcaaattgtataccgatatcgagttaccaattgctttagtcctttccaaaatggaaatt
gcgggcgttcgcgtagataccaatcgtttggaacagatggaaagtgaattcacagaacga
ctgactgaaattgaacaaaccatctacaatgaagccggcgaagaattcaatattaaatct
actaaacaacttggctcaattttatttgaaaaattaggactgccaagttctaaaaaaacg
aaaacaggctattcaaccgcagttagcgttttggaaggtttaagaggacaagccccaatt
attgataatattttaatttaccgacaaatctcaaaaattcaatcaacttacgtaaaggga
ttattgaaagttgttcattcttcagatcaaaaagtgcacacaacctatctccaaaccttg
acgcaaacaggtcgtttatcttcaattgatcctaatttgcaaaacattccgatccgctta
gaggaaggtcgtaaaattcgacaggcatttgttccgagtgcagataatgcgcaaatcttt
tcgtccgattattcccaaattgaattacgggttttagcacacattactggtgacaaaaat
atgcaggcggcatttaaaaatggggaagatattcatgctagtactgcggtccgaattttt
ggtttaaaggatgcatccgaagtgacaccgaatattcggcgccaagcaaaagctgttaat
tttgggatcgtgtatggaattagcgattatggtttatcgcaaaatattggtatttcacga
aagcaagctaaaacctttattgatacttacttccaggaatatccaggggttaaagcattt
atggatcaaatcgttgaaacagctagaaagcaaggctatgtagaaacgattgcgcaccga
cgtcgttatttaccagacattaactctagcaatcataatcaacgttcgtttgctgagaga
acggctatgaacacgccgattcaaggtagtgctgctgatattattaaaattgcaatgatt
caaatgcaagatgagttagagaagcgacagttaaaaaccgaaatgttgctacaggttcat
gatgaactgatctttgaagtgcctgatgatgaattggcgttagttaaggatctagtgcca
agtatcatggattctgcagtgaaattagacgtccctctgaaagtagagagcgcgtttggc
aaaagctggtataacgctaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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