KEGG   Pirellula sp. SH-Sr6A: VN12_16315
Entry
VN12_16315        CDS       T04360                                 
Symbol
dnaN_1
Name
(GenBank) DNA polymerase III subunit beta
  KO
K02338  DNA polymerase III subunit beta [EC:2.7.7.7]
Organism
pir  Pirellula sp. SH-Sr6A
Pathway
pir03030  DNA replication
pir03430  Mismatch repair
pir03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VN12_16315 (dnaN_1)
   03430 Mismatch repair
    VN12_16315 (dnaN_1)
   03440 Homologous recombination
    VN12_16315 (dnaN_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pir03032]
    VN12_16315 (dnaN_1)
   03400 DNA repair and recombination proteins [BR:pir03400]
    VN12_16315 (dnaN_1)
Enzymes [BR:pir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     VN12_16315 (dnaN_1)
DNA replication proteins [BR:pir03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     VN12_16315 (dnaN_1)
DNA repair and recombination proteins [BR:pir03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     VN12_16315 (dnaN_1)
SSDB
Motif
Pfam: DNA_pol3_beta_2 DNA_pol3_beta DNA_pol3_beta_3
Other DBs
NCBI-ProteinID: AMV33694
UniProt: A0A142Y3K2
Position
complement(4074989..4076101)
AA seq 370 aa
MKIVCNREKFQSAYQIAAAVAPIRSPKEILINVKLDARGDKAVLMATDSEAGIRLEMDDV
EIAVPGVALLPLQRVGNILRECSDEVLTIELTENSLDIRGDHSEFHLPKINPDEFPSVTP
FQESAYYEVPARLFKELVKRTVFATDVESTRYQLGGVLFEMEDDQITTVATDGRRLACMH
GKGVAIGGFKNSGNSTIVPTKTLQLMERSISDGDDLVCIAARANDILIRTNRCTIFSRLV
EGRYPNWKQVMPSREGRTRIDGLAGPFFTAIRQASIVADTESRGVDFTFGNGTLVVAARA
ADIGQSRIEIPISYDGESINITMDYRYVMDFFKVLDPDKAFALEVRSNAEPALFSTDDGY
TYVVMPMARQ
NT seq 1113 nt   +upstreamnt  +downstreamnt
atgaagatcgtttgcaaccgagaaaaattccaaagcgcctaccagattgcggcggctgtg
gccccgattcgatcccccaaagagatcttgatcaatgtgaaactggacgcgcgcggcgac
aaagccgtgctgatggctaccgactccgaagcgggcattcgattggaaatggacgatgtc
gagattgcggttcccggcgtcgctttgttacccctgcagcgagttggcaacatcctccga
gagtgcagcgatgaagtattgaccatcgaacttacggaaaattctctcgacatccgaggg
gaccactcggaattccatctgcccaagatcaatcccgatgagttccccagcgtcactccc
tttcaagaatccgcgtactacgaagtcccagctagactcttcaaggagttagtaaaacga
acggtgttcgcaaccgatgtcgagagcacccgatatcaactcggaggcgttctcttcgaa
atggaggacgaccaaatcacgacggttgcaaccgatggccgccgactagcctgcatgcac
ggcaaaggtgtcgcgatcggaggcttcaaaaatagcggaaactcgacaatcgtaccaacg
aagacgttgcagttgatggaacgatccatctcggatggagacgatctcgtctgcatcgca
gctcgcgccaacgatattctcatccgaaccaatcgatgcaccatcttctcgcgactcgtg
gaggggcgttatcccaactggaaacaagtcatgccaagtcgtgagggccgcaccagaatc
gatggattggcgggcccgttcttcacagcgattcgtcaagcttcgattgtggccgacacc
gaatcccgcggcgtcgacttcaccttcggcaatggcacactggtcgtcgcagcgagggct
gccgatatcggccaatcccgtatcgagattccgatctcgtacgatggcgaatcgatcaat
atcacgatggattaccgctacgtaatggatttcttcaaagtgctggatccggacaaggcg
ttcgcactcgaggttcgcagcaatgcagaaccggcattgttttcgaccgacgacggatac
acctacgtcgttatgccgatggcccgacaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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