KEGG   Prevotella intermedia: PIN17_0136
Entry
PIN17_0136        CDS       T02058                                 
Symbol
dnaX
Name
(GenBank) DNA polymerase III, subunit gamma and tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
pit  Prevotella intermedia
Pathway
pit03030  DNA replication
pit03430  Mismatch repair
pit03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PIN17_0136 (dnaX)
   03430 Mismatch repair
    PIN17_0136 (dnaX)
   03440 Homologous recombination
    PIN17_0136 (dnaX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pit03032]
    PIN17_0136 (dnaX)
   03400 DNA repair and recombination proteins [BR:pit03400]
    PIN17_0136 (dnaX)
Enzymes [BR:pit01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PIN17_0136 (dnaX)
DNA replication proteins [BR:pit03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PIN17_0136 (dnaX)
DNA repair and recombination proteins [BR:pit03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PIN17_0136 (dnaX)
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA DNA_pol3_gamma3 AAA_22 RuvB_N AAA_5 AAA_14 AAA_30 AAA_24 TIP49 DNA_pol3_delta ResIII AAA_19 AAA_18 DEAD AAA_16 DNA_pol3_delta_C Op_neuropeptide AAA_assoc_2 Mg_chelatase NTPase_1 Rad17 RNA_helicase AAA_2 Viral_helicase1 VapE-like_dom AAA_7 QueC TsaE
Other DBs
NCBI-ProteinID: AFJ07469
UniProt: A0AA85YT18
Position
I:158553..160337
AA seq 594 aa
MDEYIVSARKYRPMSFSTVVGQQALTTTLMNAVKNGKLAHAYLFCGPRGVGKTTCARIFA
KTINCEHPTEQGEACNECESCQSFNEGRSYNIFELDAASNNSVENIKTLMEQTRIPPQVG
RYKVFIIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM
SVSGIISHLKAVAEKEGIAYEEQALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVI
EDLNVLDTENYFNIVDLSVENKVPEIMVLLNNVINKGFDAGNLVNGLASHVRNVLMAKDP
QTLPLLETSEQQRQRYQEQAAKCPTQFLYKALEVMNRCDVEYRQSSNKRLLVELTLIQVA
QITQKDDDVPSSGRSPKQLKTLFRNLIVKAQPQTASQVAGASRKHNAHDDGRSSVVTHVT
VSTTTPPASIPPAVPAMPKVKLGGLGMSFANLLNEGKKEEKQEEEVEITNKDENQSFTPQ
ELIVEWKGMCTRIAKTNAGLAQRMKFIKPQILPDGKIEIVAGNKILLDEMHAIQGRIRAT
MAQRLHNGQIDVVLRLAKAEEIKPILTPRQELEKMKQQNSSIAKLIEQLGLDLA
NT seq 1785 nt   +upstreamnt  +downstreamnt
atggacgaatatatcgtttcggcacgaaaataccgacccatgtcgttctctaccgtggtg
ggacagcaggctcttaccacgacattgatgaacgccgtgaagaacggaaaacttgcccac
gcctaccttttctgcggcccccgcggcgtaggaaagaccacttgcgcacgcatttttgcc
aagaccatcaactgcgaacaccctaccgagcagggcgaagcgtgcaacgagtgcgagagt
tgccagtcgttcaacgaaggacggagctacaacatcttcgaacttgatgcggcaagcaac
aactctgttgagaatatcaagacactgatggagcagactcgcattccgccacaggtggga
cgatacaaggttttcatcatcgacgaggtgcacatgctgtctactgcggctttcaacgct
tttctgaaaacgctggaagaaccgcccgcacacgtcatcttcattctcgctacgaccgaa
aagcacaagattctgcccaccatactctcgcgttgtcagatttacgacttcgagcgtatg
tcggtgtcgggcatcatcagccacctgaaagcagtggctgagaaagagggaatcgcttac
gaagagcaggcattgaacgtgattgccgagaaagccgacggcggaatgcgcgacgcactc
tccatttttgaccaggcagcgagcttctcgcagggcaatataacctatcagaaagtgata
gaagaccttaacgtgctggacacggaaaactatttcaacatcgtagacctgtcggttgaa
aacaaggtacccgaaataatggtgctcctgaacaacgtcatcaacaagggtttcgatgca
ggcaacctcgtgaacggcttggcttcgcacgtgcgcaacgtgctgatggcgaaagaccca
cagacacttccgctgctcgaaaccagcgagcagcaacgccaacgctatcaggaacaggcg
gcaaagtgccccacacagttcctctacaaggcactggaggttatgaaccgctgcgatgtg
gaataccgccaaagctcgaacaagcgtcttttggtagaacttacgctcatacaagtggca
caaatcacacagaaagacgacgatgtgcccagttcggggcgtagccccaagcagctgaaa
accctgttcagaaatcttatagtaaaggctcaaccgcaaacagcgtcgcaggtagctggg
gcgagccgtaagcataacgcccacgacgatgggcgcagcagcgtggtaacccacgttaca
gtcagcaccacaacccctcccgcgagcattcctcccgctgttcccgccatgccgaaagta
aagctcggcggtctcggaatgtcgtttgcaaacttgctgaacgaaggaaagaaagaggaa
aagcaagaagaagaggtagaaataaccaacaaggacgagaaccaaagcttcaccccacag
gagttaatcgtggaatggaagggtatgtgcacccgcattgccaagacgaacgcaggcttg
gcgcagcgtatgaagtttataaagccacagattctgcccgacggaaagatagaaatagtg
gcaggaaacaaaatcctactcgacgaaatgcacgccattcaaggccgcatacgtgccacg
atggcgcagcgtctgcacaacggacaaatcgatgtggtgttgcgattggcaaaggcagag
gagataaaacccattctcacccctcgccaagaactcgagaaaatgaagcagcagaacagt
tccatcgctaagcttattgagcagttggggctcgatttggcgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (29)   
   Pfam (29)   
All databases (42)   

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