KEGG   Peptoniphilus ivorii: NCTC13079_00956
Entry
NCTC13079_00956   CDS       T06636                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
piv  Peptoniphilus ivorii
Pathway
piv03030  DNA replication
piv03410  Base excision repair
piv03420  Nucleotide excision repair
piv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:piv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NCTC13079_00956 (ligA)
   03410 Base excision repair
    NCTC13079_00956 (ligA)
   03420 Nucleotide excision repair
    NCTC13079_00956 (ligA)
   03430 Mismatch repair
    NCTC13079_00956 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:piv03032]
    NCTC13079_00956 (ligA)
   03400 DNA repair and recombination proteins [BR:piv03400]
    NCTC13079_00956 (ligA)
Enzymes [BR:piv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NCTC13079_00956 (ligA)
DNA replication proteins [BR:piv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NCTC13079_00956 (ligA)
DNA repair and recombination proteins [BR:piv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NCTC13079_00956 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NCTC13079_00956 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     NCTC13079_00956 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NCTC13079_00956 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 HHH_2 BRCT HHH PTCB-BRCT DNA_ligase_ZBD BRCT_2 Auto_anti-p27
Other DBs
NCBI-ProteinID: VEJ35790
UniProt: A0A448V1U8
Position
1:complement(935335..937275)
AA seq 646 aa
MNMREIVDQLNRWAEAYYTYDDPLVDDATYDALYDRLVQMETETGHTEPDSPTLRVGGAL
LKAFSKADHETPLYSLDKAQSFETLQNWAQRMETAGALDAGMMAELKFDGLTISLTYDGG
RLTRALTRGNGTTGEVITEQVRTISSVPLSIPFTGHLVVQGEGLMPFASLERYNRTAVQK
LKNARNGAAGALRNLNPKETRRRGLIAYLYNATAIEDAQFQTDREVKVFLAEQGFLVHPM
TKRVDGFAELLDYIREVEETRDLLDVLIDGVVVKINDLAARERLGHTIKFPRWAIAYKFE
AKEVNTRLLDVEWNVGRTGKVTPTAILEPVEIDGATIQRATLNNYDDILRKGVKKGGAVL
LRRSNEVIPEILKGIGEEGEPIPVITHCPACQTELIRDGVHIFCPNTIGCEPQLVRRISH
FASRDAMDIEGLSEKTAQKLIAADLVREIPDLYALDADALMELEGFGPKKAENLISALQN
SKRVPFARFLYALGIGQVGKKTAGDLANSFSDLEALSHADRAALEKIEDIGPHTAEEIRL
FFTDPVIAEYLEDFQKAGIEILYPEKAAGDLLEGYTFVLTGTLSMPRDAMQKKLEAEGAK
VTGSVSKKTDFVLAGDNPGSKVEKARTLNIEILSEDELYTRWGELR
NT seq 1941 nt   +upstreamnt  +downstreamnt
atgaatatgcgagagatcgtagaccaattaaaccgttgggccgaagcctactacacctat
gacgatccgctggtggacgatgcgacttacgacgccttgtacgaccgattggtgcagatg
gaaacagagacgggacacacagaacccgattcgccgacgcttcgggtgggcggtgcgctg
ctgaaggcattttcgaaagcggatcacgagacgcctctttactccctcgacaaagcgcag
agtttcgagactttacagaactgggcgcagcgcatggagacggcgggcgctctggatgcg
ggcatgatggcggaactcaaattcgacggccttacgatttctctgacctatgacggcggc
agactgacccgtgcccttacgcgggggaacggcaccacgggagaggtcatcaccgaacag
gtacgtacgatttcttctgtgccgctttcgattccctttaccgggcacttggtggtacag
ggggaagggctgatgccctttgcttcgttggagcggtacaatcgaacggctgtgcagaaa
ttaaaaaacgcccgaaatggcgcggccggggccctgagaaatctcaatcccaaagagacg
agaaggcgggggctgatcgcctatctttacaacgccaccgccatcgaggacgcgcagttt
caaaccgatcgagaggtcaaagtctttctcgccgagcagggttttctcgtccatcccatg
accaaacgcgtagacggttttgcagaactcttggactacattcgagaggtggaagagacg
cgcgatttgctggacgttttgatcgacggcgtagtggtaaagatcaacgacctcgcggcg
cgggagcgcttggggcatacgatcaagtttccccgctgggcgatcgcctataaattcgag
gcaaaagaggtcaacacccgccttttggatgtagaatggaatgtggggcgcacgggaaag
gtgacacctacggcgatcctcgagcccgtggaaatcgacggcgccaccattcagcgggcg
acgctcaacaattacgacgacatcctcagaaaaggcgtaaagaaaggcggcgcggtactg
ctccgcagaagcaatgaggtgattcccgagatcctaaagggcatcggagaagagggggag
ccgatccccgtcatcacccattgtcccgcctgccaaaccgagctgattcgcgatggggtg
catattttttgccccaataccatcggctgcgaaccacagctggtccggcgcatcagccat
tttgcctcgcgagatgcgatggacatcgaagggcttagcgaaaaaacggcgcagaagctg
atcgcggccgatctggtgcgcgagatccccgacctctacgctttggatgccgatgcgctg
atggaactggaagggttcgggccgaaaaaagcggagaatttaatttccgccttacaaaat
tcgaagcgcgtgccctttgcgcggttcttgtatgccttggggatcgggcaagtgggcaaa
aagacggcaggggatctcgcaaacagcttttccgatctcgaggccctttcccatgccgat
cgggcggcgctcgagaagatcgaagacatcggcccgcataccgccgaggagattcgattg
ttttttaccgaccccgttatcgccgaatatctcgaagatttccaaaaggcggggatcgag
atcctctatcccgaaaaggcggcgggggatctcctcgaaggctatacctttgtgcttacc
ggtacgctcagcatgccgcgggatgcgatgcagaaaaaactcgaggcggagggcgccaaa
gtcaccggttccgtctcgaaaaagacggacttcgttttagccggcgacaatcccggctcg
aaggtcgaaaaggcgcgaacactgaatatcgaaatcttgtcggaagacgagttatatacc
agatggggggaattacgatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system