KEGG   Paenibacillus sp. JDR-2: Pjdr2_2214
Entry
Pjdr2_2214        CDS       T00977                                 
Name
(GenBank) RNA modification enzyme, MiaB family
  KO
K18707  threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
Organism
pjd  Paenibacillus sp. JDR-2
Brite
KEGG Orthology (KO) [BR:pjd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pjd03016]
    Pjdr2_2214
Enzymes [BR:pjd01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.5  tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
     Pjdr2_2214
Transfer RNA biogenesis [BR:pjd03016]
 Prokaryotic type
  tRNA modification factors
   Methylthiotransferases
    Pjdr2_2214
SSDB
Motif
Pfam: UPF0004 Radical_SAM B12-binding TRAM Mg_chelatase
Other DBs
NCBI-ProteinID: ACT00870
Position
2599589..2600935
AA seq 448 aa
MPSVAFYTLGCKVNFYDTEAIWQLFKNEGYEQVDFESTADVYLINTCTVTNTGDKKSRQI
IRRAVRRNPDAVIAVTGCYAQTSPAEIMAIPGVDLVIGTQDREKIMTFVNQIHDDRQPVN
AVRNIMKTREFEELDVPDFNERTRAFLKIQEGCNNFCTFCIIPWSRGLSRSRDPKSVLEQ
AKQLVASGYKEVVLTGIHTGGYGDDMENYRLVDLLWDLDKIEGLERIRISSIEASQIDDA
MIDVLNRSTKMCRHLHIPLQAGDTSVLKRMRRKYTTDEFAAKLKRIREAMPGVAITTDVI
VGFPGETEEMFENGYKFMEEVGFSEMHVFPYSKRTGTPAARMDDQVDDEVKNERVHKLID
LSEKMQLAYAEQHVGAVLDVIPERDYKGAPGTGLVMGYSDNYIQIVFEGTEALVGKLCRV
KITEAGVNECRAQLVRVLDDVPAEAMRA
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgccatcggttgcattttacaccttgggatgcaaagttaacttttacgacacagaagcg
atttggcagctgttcaaaaacgaaggatacgagcaggttgatttcgaatcgacggctgac
gtatacctgatcaatacatgtacggttaccaataccggcgacaagaagagccgccagatt
attcgccgcgcggtgcgccgtaatccggatgcggttattgcggttacgggctgctatgcc
caaacgtctcctgcagaaattatggccattccgggggtagacctggttattggtacgcag
gaccgcgagaaaatcatgacgtttgtgaaccagattcacgatgaccgccagccggttaac
gcggttcgcaacattatgaagacccgtgaattcgaggaactggacgtcccggatttcaac
gagcgtacgcgcgcttttctgaagatccaggaaggctgcaataacttctgcaccttctgc
attattccgtggtcgcgtggtctttcgcgcagccgcgatccgaagagcgtactcgagcaa
gcgaagcagcttgtagcttccggttataaggaagtcgtccttaccggtattcatacgggc
ggttatggcgacgatatggagaattaccgtctcgttgacctgctgtgggatctggacaag
atcgaaggactggagcggatccggatcagctctatcgaagccagccagattgacgatgcg
atgatcgacgtgcttaaccgttcgaccaaaatgtgccgtcatctgcacattccgcttcaa
gccggcgatacctccgtgctcaagcggatgcgccgtaaatatacaacggacgagtttgct
gccaagctcaaacggatccgcgaagcaatgcctggcgtagcgattacgacagacgttatc
gttggtttccctggcgagacggaagaaatgttcgagaacggctacaagtttatggaagag
gtaggtttctcggaaatgcacgtcttcccgtattcgaagcgtacaggcacgccagctgcc
cgcatggacgatcaagtggacgacgaagtgaaaaacgaacgcgttcataaactgatcgac
ctgtccgagaaaatgcagcttgcctatgctgagcagcatgtaggtgccgtactggatgtt
attccggagcgtgactacaaaggagctcccggtacggggcttgtcatggggtactcggat
aactatattcagattgtgtttgaaggaaccgaagcgcttgtcggcaagctttgccgcgtg
aaaattactgaagcaggcgtcaatgaatgccgcgctcagcttgtccgcgtacttgacgat
gtaccggcagaagcgatgagagcttag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (33)   

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