KEGG T00977: Pjdr2

Paenibacillus sp. JDR-2: Pjdr2_2634

Entry

Pjdr2_2634        CDS       T00977

Name

(GenBank) apurinic endonuclease Apn1

K01151

deoxyribonuclease IV [EC:3.1.21.2]

Organism

pjd Paenibacillus sp. JDR-2

Pathway

pjd03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:pjd00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Pjdr2_2634
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pjd03400]
    Pjdr2_2634
Enzymes [BR:pjd01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.2  deoxyribonuclease IV
     Pjdr2_2634
DNA repair and recombination proteins [BR:pjd03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     Pjdr2_2634

SSDB

Motif

Pfam:

AP_endonuc_2

Other DBs

NCBI-ProteinID:

ACT01288

Position

3053532..3054362

AA seq 276 aa
MYIGRHLSIKEGYASAAKAAYSGGINAFQYFPKNPRSLGLKSFDRREAERCAELCKQYDI
LTIAHSPYPTNLASEREDVRQRTVESLLNDLDIANSCGSIGVVVHFGVYKGKEPLAGYQS
IIQSLNEVTSRWNGNAKLLIEIQSGEHTFMGTTIEELAQIRGLCAEPAKLAFCLDTCHMF
ASGLWHGETDAEWLKKAVSLGVLEHVAAVHFNDSMFAAGARRDRHAALGSGHIGEAGLKW
LMSVPALAGVPFILETPSDEDGSYGRQLNLMREWGT

NT seq 831 nt +upstreamnt +downstreamnt
atgtacatcggccgtcatctcagcataaaggaaggctatgcctccgccgccaaagccgcc
tattcgggcggcattaatgcttttcagtattttccgaaaaacccccgcagccttggactt
aaatccttcgaccggagagaggctgagcgctgcgcggaactgtgcaagcagtacgatata
ctgaccatcgcgcattccccctatccgacgaatctggcttcggaacgggaggatgttcgc
cagcgtaccgttgaatccttgcttaatgatctggatattgcaaacagctgcggctccatt
ggcgttgtcgttcattttggcgtctataaagggaaagaaccgcttgccggttaccaatcc
attattcaatcgctgaatgaagtgacaagcaggtggaacgggaatgccaagctgctgatt
gagattcaatctggcgagcatacgtttatggggacgaccattgaggagttagcccaaatc
cggggattatgcgcggagcctgcgaagctggctttttgtctggatacctgccatatgttt
gcgagcggtttatggcatggtgagactgatgcggaatggctgaagaaagccgtctcatta
ggggtgctggagcatgttgcggctgtgcacttcaatgactcgatgttcgcggctggcgca
cggcgggaccggcatgcggcgcttgggagcggccatatcggcgaagcaggactgaagtgg
ctgatgtccgtgcccgcacttgctggcgttccttttatactggaaacgccttcagacgaa
gacggttcttatggaagacaattaaacctgatgcgcgaatgggggacatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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