KEGG   Paenibacillus sp. JDR-2: Pjdr2_4985Help
Entry
Pjdr2_4985        CDS       T00977                                 

Definition
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pjd  Paenibacillus sp. JDR-2
Pathway
pjd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pjd00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Pjdr2_4985
Enzymes [BR:pjd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pjdr2_4985
DNA repair and recombination proteins [BR:pjd03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Pjdr2_4985
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: ACT03596
UniProt: C6D0J7
Position
5700076..5700990
Genome map
AA seq 304 aa AA seqDB search
MNKTSASAKRPAMVMVEGQEITVTNPEKPLWPEHGITKLMYLEKLAMLSPFLLKHCKDRY
LTTIRYPHGYAGKSFYQKNCPEPKPEFVHISESEGISYIQLDNLPTLLWLGNLACLEFHA
SFDRISNPDRPTEWILDLDPSREEEPRIIEAAALVGKLLESLKIKSVPKTSGATGVQIVV
PLQQKYTFDELRGLGQFVGDYLSSAYPQLFTVERLTKNRGDLIYVDYLQHYRGKTISAPY
TPRARYGAPVSTPLKWEEVYAGGIKPADFHLLNIGERLQRFGDLIDLEKPQDLGHVLSFI
HAKK
NT seq 915 nt NT seq  +upstreamnt  +downstreamnt
atgaacaagacaagcgcatctgccaagcggcccgcaatggtcatggtggaaggacaggaa
ataacggttacgaatccggagaagcccctttggccggagcatgggatcactaagctgatg
tatttggagaagctcgccatgctgtcgccttttttgctgaagcattgcaaggaccgttat
ttgacgaccatccgttacccgcatggttatgcgggcaaatcgttttatcagaaaaactgc
cctgagccaaaaccggagtttgtccatatctccgaaagcgaagggatctcgtatattcaa
ctcgataacctgccgactttgttatggctcggcaacctggcttgccttgagttccatgca
tccttcgaccggatcagtaatccggaccgccctaccgaatggattctggatcttgatcct
tcccgcgaggaagaaccgcgtatcatcgaagcggctgcgcttgtcgggaagctgctggaa
tcgctgaagatcaaatccgtccccaaaacctctggcgcaacgggcgtccagattgttgta
ccgttacagcagaaatacaccttcgatgaattgaggggcttagggcaattcgtcggcgac
tacctgtccagcgcttatccccagcttttcaccgttgaacggttgaccaaaaaccgcggc
gacctgatttacgtcgattatcttcagcattacagggggaaaacaatctcagccccttat
acgccaagagcgcgctatggcgctcccgtctccacgccgctaaagtgggaagaagtgtac
gccggaggcataaagccggccgacttccatcttctgaacatcggagagcgactgcagcgt
ttcggcgatttgatcgatttggagaagccgcaggatttgggccatgtgctcagctttatc
catgctaaaaaataa

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